Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01584 ATGGCAGGATCACATTGTTTCATCATGCTACTGATTCTTCTCCTGCTAATCAATAGCAGCAGCAGTCATGATGAATGCAGCGAATCATCTTGTGGACATAACCAACCGATTATTCGATTCCCCTTCCAACTAATCAAAGATTCACAAGATCAATGTGTTTATCCTGAGTTTTGCCTACATTGTACTGAAAATAAAAAAACCATGCTTTTACTTCCTACCCCTTTAGGTCCAGTTCAATTCTTTGTCCCACAAATCGACTACGACTTAAACCTAATTTCGATTTCAGACCCCGAAAATTGTCTTACAAAAAAGTTACTCAAACTCAAACTTAACAGTTCATCATTTCTACCTTACCGATTTGATTCAGAATCGAAATCGAAAATTTCTTTCTTCAACTGCTCTTCAGTTAGGAAACAACACCTGAGAAACCTTGATCTTATAAATCCAAACTCGCAAGATATGACTACCTGCCCAATTTACGCTTCTTGTTCGGACGAAAGTGTTGTCGAATTAGACCTTGAGTCGTGTACCAAAATGTTTGATGTTAGTAGGAATTTCAGTGCAATGGATCTGAGGTCTAATCAACTGAGTTTGAGTTGGCCTATACCAAATTGTGCAATGTGTTCCGCGAAAGGCAAGAAATGTAGATGGAATAACAATGCCACAAAACATGGTGGCATTGAATGCTTTGTTTGCAACGTTGAACGGAAAACAATTCAAATTCCAAAATCTGTTATTTTCGCTACTGCCGGTTCAATTATATTGGGGTTAGTCACCATTGCACTTATTAAGATTTATCTACATTTTAGAGAAAAAGAAGAAGATCGAGTTAGAATCGATAAGTTTTTAGAGGATCATCGAGCACAAAAGCCCGCTAGATTTTCCTATGCTGATATTAAAAGAATCACGGGCGGATTTAAGGAAAAGTTGGGAGAAGGAGCTCATGGAACTGTATTTAAAGGAAAACTCTCTAGTGAGATTCTAGTGGCTGTGAAGATTCTCAACAATACACAAGGAGAAGGGAAAGAGTTCATCACTGAAGTCGAAATTATGGGCAAAATCCACCACATTAACGTGGTTCGTTTGCTCGGTTTTTGCGCAGATGGAATTCACCGAGCTCTTGTATAA 1128 0.3821 MAGSHCFIMLLILLLLINSSSSHDECSESSCGHNQPIIRFPFQLIKDSQDQCVYPEFCLHCTENKKTMLLLPTPLGPVQFFVPQIDYDLNLISISDPENCLTKKLLKLKLNSSSFLPYRFDSESKSKISFFNCSSVRKQHLRNLDLINPNSQDMTTCPIYASCSDESVVELDLESCTKMFDVSRNFSAMDLRSNQLSLSWPIPNCAMCSAKGKKCRWNNNATKHGGIECFVCNVERKTIQIPKSVIFATAGSIILGLVTIALIKIYLHFREKEEDRVRIDKFLEDHRAQKPARFSYADIKRITGGFKEKLGEGAHGTVFKGKLSSEILVAVKILNNTQGEGKEFITEVEIMGKIHHINVVRLLGFCADGIHRALV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01584 375 Pfam Protein tyrosine and serine/threonine kinase 306 370 IPR001245 GO:0004672|GO:0006468
Trre12g01584 375 FunFam S-receptor-like serine/threonine-protein kinase 272 375 - -
Trre12g01584 375 Gene3D Phosphorylase Kinase; domain 1 278 375 - -
Trre12g01584 375 ProSiteProfiles Protein kinase domain profile. 304 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01584 375 SUPERFAMILY Protein kinase-like (PK-like) 290 373 IPR011009 -
Trre12g01584 375 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 282 IPR046948 -
Trre12g01584 375 Pfam Wall-associated receptor kinase galacturonan-binding 26 96 IPR025287 GO:0030247
Trre12g01584 375 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01584 Trre-Chr12 15670108 15671235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01584 223 375 Receptor kinase-like Gene Family AT2G14510 39.744 5.63e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre12g01584 GUB_WAK_bind 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01584 - - mtr:25482287 493.812