Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01582 ATGTCATCTGTGATTGGCTCATTTGGCTACATTGCTCCAGAATATGTTCAAACAACAAGAGTTACTGAAAAGATTGATGTGTTTAGCTTTGGAGTTGTCCTATTGGAACTAACAACTGGTAAAGAAGCTAACTATGGAGACCAATACTCGTCTCTTTCGGAGTGGGCATGGCGTCAAACTTTGTTAGGAATCAATGTAGAAGAATTGCTAGACAAAGATGTGATGGAAGCTAGTTACTTGAATGAAATGTGCACAGTTTTCAAACTTGGTGTCATGTGTACTGCAACATTGCCTTCTAGTAGGCCTTCCATGAAAGAAGTCATGCAGATATTGCTTAGCTTTGCAGAACCATTAGCTTATGGAAAGAATAAAGTTGGTCACTACTATGATGCTGATCCTCTTCTTAAGAATTCAAAAAGTGACACTAGGTTGGATGTTGATGATATGTGA 450 0.3844 MSSVIGSFGYIAPEYVQTTRVTEKIDVFSFGVVLLELTTGKEANYGDQYSSLSEWAWRQTLLGINVEELLDKDVMEASYLNEMCTVFKLGVMCTATLPSSRPSMKEVMQILLSFAEPLAYGKNKVGHYYDADPLLKNSKSDTRLDVDDM 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01582 149 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 111 - -
Trre12g01582 149 Pfam Protein kinase domain 2 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01582 149 SUPERFAMILY Protein kinase-like (PK-like) 2 115 IPR011009 -
Trre12g01582 149 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01582 149 Gene3D Transferase(Phosphotransferase) domain 1 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01582 Trre-Chr12 15640469 15641199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01582 1 148 Receptor kinase-like Gene Family AT5G25930 51.351 6.19e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre12g01582 Pkinase 3.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01582 - K00924 gmx:100789972 240.736