Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01581 ATGAATATCACAAAAACAATACCACCCTTTATTTGTAATGAGCTTAAGAACCTAACACATGTTGATTTTAGTTCCAATTTTATCCCTGGTGATTTTCCAACACTTTTTTATAATTGTTCAAATCTTGTTTACTTAGACCTTTCTTGGAACAATTTTGATGGTAAAATTCCTAATGATATTGGAAACTTGAGTCCTAGTTTGCAATATCTTAATCTTAGTTCAACAAATTTTCATGGTGGTGTTCCTGATGGTATTGGAAAGTTGAAGGAATTGAAAGAATTTAGAATTCAATATTGTTTATTGAATGATACTGTTTCTGATGAGATTGGTGAATTGTTGAATCTTGAGTATTTTGATTTGTCCTCTAATGCTATATTTCCTTCATGGAAATTACCATTGAGTTTGACCAAGTTGAATAAATTGAAGGTTTTTAATGTTTATGGCTGTAACCTGTTTGGTGAAATACCTCAAAGAATTGGAGATATGGTTTCTTTGGTGAGATTGGATATGTCAAGTAATAGTTTATCTGGTGAAATTCCTAGTGGTTTGTTCATGTTGAAGAATTTGAGTATACTTTTTCTTAACAGGAACAATCTCTCTGGAGAGATACCTAGTTTGGTTGAATCATTGAATTTGACTAAACTTGATCTTGCAATCAACAATCTTGTAGGGAAAATACCAGATGATTTAGGAAAGCTGCAAAACTTAACATGGTTGAGTTTGTCTATGAATAGTTTATCAGGTGTGATACCAGAAAGTTTAGGCCGTCTTCCGTCTCTTACCGATTTTCGTGTGTTTTTGAACAATTTATCAGGTACTATTCCTCCTGGATTTGGTCGCAATTCAAAGCTCGAAACTTTTCATATTGCATCTAATAGTCTTGTTGGAAAGTTACCTGAGAATTTATGCTATCATGGTGAGTTACTTAACTTGACAACTTATGAAAATAGACTTAGTGGAGAGTTACCAAAATCACTAGGAAATTGTAGTAGCTTGTTGGATTTGAAAATTTACAGAAATGAATTTTCTGGTATTATTCCTAGTGGTCTTTGGACATCTTTCAATTTATCAAATTTCATGGTAAGCAATAATAAATTCAAGGGTGTGATTCCAGAAAAGTTGTCTTCGAACATTTCGCGGTTCGAGATAGCTAACAATCAATTCTCTGGTAGAATTCCATCTGGAGTATCTTCATGGACTAATGTGGTAGTGTTCGATGCAAGTAACAACTTCTTAAATGGAAGTATTCCACAAGAGATAACATCTCTTCCAAAATTAACAACTCTTTTGCTTGATCAGAATCAGCTCAATGGTCCACTTCCATCAGATATAGTATCATGGAAGTCCTTAGTGACTCTTAATTTGAGCCAAAACCAACTTTCTGGTCAAATTCCTGATGCAATTGGAAAATTACCTGTCCTAAGTCAACTTGATTTGTCTGAAAATGAATTTTCAGGCAAAGTTCCATCTCAACTTCCTAGACTCACCAATCTCAATCTGTCATCGAATTATTTGATAGGAAGGATTCCAGGTGAATTTCAAAATCAAGGGTTTGCTACAAGCTTTTTGGCTAATTCTGGTCTTTGTGCTGATACACCGATACTAAACATTACTCTGTGCAATTCTGGTATTCAAAGTGGAAACAAAGGATCATCATGGTCTATTGGTTTGATTATAGGCCTTGTGGTAGTGGCAATTTTATTGGCTTTTTTGGCCAGTTTCTTGATTGTCAAAGCTTTCAAGAAAAGAAACCAAGGTTTGGATAATTCATGGAAGCTTGTTTCCTTTCAGAGGCTCAGTTTCAATGAATCAAACATCGTCTCATCAATGACAGAACAAAATATTATTGGACGTGGTGGATATGGCACGGTATATCGAGTTGATGTCGCTGGTTTAGGCTATGTTGCTGTGAAAAAGATATGGAATAACAAAAAGTTAGACGAAAAACTCAAGAGTTCGTTTCGCGCAGAAGTTAAAATATTGAGCAATATTCGTCATAACAACATTGTGAGATTGTTGTGTTGTATCTCTAATGACGATTCTATGCTTCTTGTCTACGAGTATCTTGAAAAACATAGTCTAGATAAGTGGCTGCGCACGAAGAGTAAGTCATCGGCATCAACTGTGTCAGGTTTAGTACAACAACATATTGTTCTTGATTGGCCAAAGAGGTTGAAAATAGCTATTGGAGCTGCTCAAGGTTTGAGCTACATGCATCATGATTGTTCACCACCTATTATTCATAGAGATATTAAAACAAGCAACATACTTTTGGATGCTCAATTCCATGCAAAAGTTGCTGATTTTGGACTTGCTAGGATTTTAGCCAAGCCAGATGAACTTAACACAATGTCATCTGTGATTGGCTCATTTGGCTACATTGCTCCAGAATATGTTCAAACAACAAGAGTTACTGAAAAGATTGATGTGTTTAGCTTTGGAGTTGTCCTATTGGAACTAACAACTGGTAAAGAAGCTAACTATGGAGACCAATACTCGTCTCTTTCGGAGTGGGCATGGCGTCAAACTTTGTTAGGAATCAATGTAGAAGAATTGCTAGACAAAGATGTGATGGAAGCTAGTTACTTGAATGAAATGTGCACAGTTTTCAAACTTGGTGTCATGTGTACTGCAACATTGCCTTCTAGTAGGCCTTCCATGAAAGAAGTCATGCAGATATTGCTTAGCTTTGCAGAACCATTAGCTTATGGAAAGAATAAAGTTGGTCACTACTATGATGCTGATCCTCTTCTTAAGAATTCAAAAAGTGACACTAGGTTGGATGTTGATGATATGTGA 2799 0.3551 MNITKTIPPFICNELKNLTHVDFSSNFIPGDFPTLFYNCSNLVYLDLSWNNFDGKIPNDIGNLSPSLQYLNLSSTNFHGGVPDGIGKLKELKEFRIQYCLLNDTVSDEIGELLNLEYFDLSSNAIFPSWKLPLSLTKLNKLKVFNVYGCNLFGEIPQRIGDMVSLVRLDMSSNSLSGEIPSGLFMLKNLSILFLNRNNLSGEIPSLVESLNLTKLDLAINNLVGKIPDDLGKLQNLTWLSLSMNSLSGVIPESLGRLPSLTDFRVFLNNLSGTIPPGFGRNSKLETFHIASNSLVGKLPENLCYHGELLNLTTYENRLSGELPKSLGNCSSLLDLKIYRNEFSGIIPSGLWTSFNLSNFMVSNNKFKGVIPEKLSSNISRFEIANNQFSGRIPSGVSSWTNVVVFDASNNFLNGSIPQEITSLPKLTTLLLDQNQLNGPLPSDIVSWKSLVTLNLSQNQLSGQIPDAIGKLPVLSQLDLSENEFSGKVPSQLPRLTNLNLSSNYLIGRIPGEFQNQGFATSFLANSGLCADTPILNITLCNSGIQSGNKGSSWSIGLIIGLVVVAILLAFLASFLIVKAFKKRNQGLDNSWKLVSFQRLSFNESNIVSSMTEQNIIGRGGYGTVYRVDVAGLGYVAVKKIWNNKKLDEKLKSSFRAEVKILSNIRHNNIVRLLCCISNDDSMLLVYEYLEKHSLDKWLRTKSKSSASTVSGLVQQHIVLDWPKRLKIAIGAAQGLSYMHHDCSPPIIHRDIKTSNILLDAQFHAKVADFGLARILAKPDELNTMSSVIGSFGYIAPEYVQTTRVTEKIDVFSFGVVLLELTTGKEANYGDQYSSLSEWAWRQTLLGINVEELLDKDVMEASYLNEMCTVFKLGVMCTATLPSSRPSMKEVMQILLSFAEPLAYGKNKVGHYYDADPLLKNSKSDTRLDVDDM 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01581 932 SUPERFAMILY L domain-like 6 374 - -
Trre12g01581 932 FunFam Kinase family with leucine-rich repeat domain-containing protein 689 910 - -
Trre12g01581 932 SUPERFAMILY L domain-like 307 515 - -
Trre12g01581 932 Gene3D Phosphorylase Kinase; domain 1 587 688 - -
Trre12g01581 932 Pfam Protein kinase domain 612 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01581 932 FunFam Receptor-like protein kinase HSL1 590 688 - -
Trre12g01581 932 SMART serkin_6 610 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01581 932 Pfam Leucine rich repeat 211 269 IPR001611 GO:0005515
Trre12g01581 932 SUPERFAMILY Protein kinase-like (PK-like) 605 894 IPR011009 -
Trre12g01581 932 Gene3D Ribonuclease Inhibitor 206 265 IPR032675 -
Trre12g01581 932 Gene3D Ribonuclease Inhibitor 1 205 IPR032675 -
Trre12g01581 932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 746 758 IPR008271 GO:0004672|GO:0006468
Trre12g01581 932 ProSitePatterns Protein kinases ATP-binding region signature. 616 639 IPR017441 GO:0005524
Trre12g01581 932 FunFam Receptor-like protein kinase HSL1 isoform A 216 540 - -
Trre12g01581 932 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 108 208 - -
Trre12g01581 932 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 211 894 - -
Trre12g01581 932 SMART LRR_typ_2 492 515 IPR003591 -
Trre12g01581 932 SMART LRR_typ_2 162 186 IPR003591 -
Trre12g01581 932 SMART LRR_typ_2 233 257 IPR003591 -
Trre12g01581 932 SMART LRR_typ_2 112 138 IPR003591 -
Trre12g01581 932 SMART LRR_typ_2 39 63 IPR003591 -
Trre12g01581 932 SMART LRR_typ_2 423 447 IPR003591 -
Trre12g01581 932 SMART LRR_typ_2 448 471 IPR003591 -
Trre12g01581 932 Pfam Leucine Rich Repeat 494 515 IPR001611 GO:0005515
Trre12g01581 932 Pfam Leucine Rich Repeat 41 63 IPR001611 GO:0005515
Trre12g01581 932 Gene3D Ribonuclease Inhibitor 266 538 IPR032675 -
Trre12g01581 932 Gene3D Transferase(Phosphotransferase) domain 1 689 908 - -
Trre12g01581 932 ProSiteProfiles Protein kinase domain profile. 610 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01581 Trre-Chr12 15640469 15643548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01581 2 931 Receptor kinase-like Gene Family AT5G25930 48.188 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre12g01581 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01581 - - gmx:100813894 1372.84