Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01558 ATGGAGATAGAACCAAGTTATAATAATAAACCAACAACAACATTAGGAAATGAAGTAGTAGCTACAAATTTACCATCTTTGAGTCCATTAAGTGAAACCCTTTGGAGAGAAAAAACAAAAACAGAGTTCATTGGTGATGTATCAGCAAGATTAACATGGAAAGATTTAACTGTTATGGTAACATTAAGCAATGGTGAAACACAAAATGTTTTGGAGAATTTAACTGGTTATGCTGAACCAGGTTATTTTACTGCTCTTATGGGACCTTCTGGTTCTGGAAAATCAACACTTCTTGATGCACTTTCTAGTCGTTTAGCTTCTAATGCTTTTCAATCTGGTACTGTTCTTCTTAATGGTCGTAAAGAAAAGTTATCTTTTGGAACTGCTGCATATGTAACACAAGATGACAACTTGATTGGAACATTAACAGTAAGAGAAACAATTTGGTATTCAGCTAGATTACGATTACCAGATAAAATGTCAAGATCAGATAAAAGAGCTTTAGTTGAAAGCACAATTGTTGCAATGGGACTTCAAGATTGTGCTGACACAGTTATTGGTAATTGGCATTTACGTGGGATAAGTGGTGGTGAAAAAAGAAGAGTTAGTATTGCATTGGAAATATTGATGAGACCTAGATTACTTTTTCTTGATGAACCAACTAGTGGACTCGACAGTGCATCAGCTTTCTTTGTGACACAAACACTACGAGCATTAGCAAGGGATGGAAGAACTGTGATAGCTTCAATTCATCAACCTAGCAGTGAAGTGTTTGAACTATTTGACCAATTGTACTTGCTTTCTGGTGGCAAAACTGTTTATTTTGGCCAAGCTTCAGATGCATATGAGTTCTTTGCACAAGCTGGATTTCCATGCCCTGCTTTGAGGAATCCCTCTGATCATTTCCTTAGATGCATCAACTCTGACTTTGATAAAGTCAAAGCTACTCTTAAAGGGTCCATGAAATTAAGGTTTGAGGGAAGTGATGATCCTCTAGACAAGATAACCACTTCTGAAGCAATCAGAACACTTATAGATTTCTACCGCACTTCTCAACACTCTTATGCTGCAAGACAAAAAGTTGACGAGATATCCAAAGTTAGAGGGACGGTGCTTGAAGCAGGAGGAAGTGAAGCTAGTTTCTTGTTGCAATGTTACATATTAACCAAACGTTCATTCATTAACATGTCAAGGGACTTTGGTTACTATTGGCTTAGGCTTGTAATCTACATTGTTGTTACTATATGCATTGGAACAATTTACTTGAATGTTGGGACTAGCTATAACGCAATTCTGGCTAGAGGTTCATGTGCATCTTTTGTCTTTGGTTTTGTCACCTTCATGTCAATTGGTGGATTTCCTTCATTTGTTGAAGATATGAAGGTTTTCCAAAGGGAGAGGCTAAATGGACACTATGGTGTGACTGCATTTGTTATAAGCAACACATTATCAGCAACACCATTTCTAATATTAATCACTTTTCTCTCTGGAACAATTTGTTACTTCATGGTTCAACTACACCCTGGCTTTTCACATTATGTTTTCTTTGTGCTCTGTCTTTATGCAAGTGTCACAGTTGTTGAAAGCTTAATGATGGCAATTGCTAGCATTGTTCCTAACTTCCTCATGGGAATTATCATTGGAGCAGGAATTCAAGGAATATTCATGTTGGTCTCTGGCTACTTTAGGCTCCCACATGATATCCCAAAGCCTGTTTGGCGCTATCCAATGTCATACATCAGTTTCCACTTTTGGGCTTTACAGGGTCAATACCAAAACGATCTAAGGGGTTTGATATTCGACAACCAAACACCAGATCTTCCTAAGATACCAGGCGAATACATCTTGGAATATATATTCCAAATCACCGTGACTAGATCAAAATGGATAGATTTAAGCGTGATCTTAAGCATGATCGTTATATACCGCATTATTTTCTTCATCATGATCAAAACCAATGAAGATGTTACTCCTTGGGTTAGAGGCTATCTTGCTAGAAGAAGAATGCAACAAAAAAGTGGAGCTCAGAATACAACTATTGCACCTGATGTTCTCACTCAATCTCCATCTTTGAGAACCTATATTTCCAATCAAAAGTAG 2100 0.3733 MEIEPSYNNKPTTTLGNEVVATNLPSLSPLSETLWREKTKTEFIGDVSARLTWKDLTVMVTLSNGETQNVLENLTGYAEPGYFTALMGPSGSGKSTLLDALSSRLASNAFQSGTVLLNGRKEKLSFGTAAYVTQDDNLIGTLTVRETIWYSARLRLPDKMSRSDKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDKITTSEAIRTLIDFYRTSQHSYAARQKVDEISKVRGTVLEAGGSEASFLLQCYILTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTSYNAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSATPFLILITFLSGTICYFMVQLHPGFSHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLIFDNQTPDLPKIPGEYILEYIFQITVTRSKWIDLSVILSMIVIYRIIFFIMIKTNEDVTPWVRGYLARRRMQQKSGAQNTTIAPDVLTQSPSLRTYISNQK 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01558 699 Pfam ABC transporter 71 222 IPR003439 GO:0005524
Trre12g01558 699 Gene3D - 44 289 IPR027417 -
Trre12g01558 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 287 IPR027417 -
Trre12g01558 699 SMART AAA_5 80 251 IPR003593 GO:0016887
Trre12g01558 699 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 40 672 - -
Trre12g01558 699 Pfam ABC-2 type transporter 384 590 IPR013525 GO:0016020|GO:0140359
Trre12g01558 699 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 51 294 IPR003439 GO:0005524
Trre12g01558 699 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524|GO:0016887
Trre12g01558 699 CDD ABCG_EPDR 48 276 - -
Trre12g01558 699 Pfam ABC-2 type transporter 251 307 IPR043926 GO:0140359
Trre12g01558 699 FunFam ABC transporter G family member 11 45 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01558 Trre-Chr12 15448365 15456249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01558 69 255 Calmodulin-binding Proteins AT2G36910 33.333 4.72e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01558 K05681 - gmx:100803731 1247.26