Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01546 ATGGATAAAGAAGAAAATTTAAACAATGGTGAAGACGTGCCTGACATAGAAAACGATGGTAGCTTGAATGGCCATGATGAAGAAATTGGAAGGTTATGGTCGCAGTATTCTGAAAGGAACATGACATATGAAGAACCACTTCTTGTGAAGAGGCTTAACACTACCTCTCAGATTGCCATAGTTGGTTCCAACCTTTGCCCTATCGAAAGCCTTGACTATGAGATTTTTGATAATGAAATGTTTAACCAGGACTGGAGGTCCAGGAAGAAGATTCAGATATTCCAATATGTGGTACTTAAATGGGTATTTGCTCTTCTTATCGGATTAGGAACCGGACTTGTTGGTCTTTTCAATAATGTTTCTGTTGAGAACATAGCCGGTTTCAAGCTGCTTCTCACAACCAGTCTCATGTCTAAACAACGATTTTTCGAGGCTTTTCTAGTATATGCTGGTCTGAATATGGTTTTAGGAGCAGCGGCTGCAGCACTCTGTGCTTTCATTGCTCCATCAGCAGCCGGCTCTGGCATTCCGGAGGTTAAAGCGTATCTCAACGGCATTGATGCTCACTCTATTCTGGCTCCATCCACCCTTTTGGTCAAGATTGTTGGTTCCATCCTTGGAGTCTCTGCTGGATTTGTGGTGGGAAAAGAAGGACCTATGGTTCATACAGGAGCATGCATAGCTTCATTTTTGGGACAAGGCGGATCTCGAAAGTATGGTTTGACTTTCAGTTGGCTTAGGCTTTTCAAAAATGATAGAGACCGGCGAGACATGATTACTTGTGGAGCAGCTGCTGGTGTTGCTGCCGCCTTTCGATCTCCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCTTGGTGGAGGAGTGCTCTTCTTTGGAGGACATTTTTTACTACAGCAGTAGTTGCTATTGTTTTAAGAGCTGGAATTCAGTTTTGTTCAACGGGGAAATGTGGACTATTTGGTGAAGGCGGTCTTATATTGTATGATGTTGGTTCAGCCCAAGTAACATATAGTGCTGGTGACATATTGGCGGTAATAGTCTTGGGAACTGTTGCCGGTATTCTTGGAAGCATATATAATTTCCTTGTCGATAAGGTCGTTCGTACGTATAGCATCATCAATGAAAAGGGTCCATTTTTCAAAATATCTCTTGCTGTTGCAATTTCTCTTTTGACATCATGCTGTTATTATTTCTTACCATGGATTGCAACCTGTATCCCTTGTCCTCCCGATTCGACGGTGACCTGTCCCTCTGTTGATGAGTCTGGAGAATACAAAAGCTTTCAATGTCCACCAGGTTACTACAACGATCTCGCTTCACTCTTTCTAAACACCAATGACGATGCTATTCGTAATCTATTCAGTCCAAAGATAAACAAAGAGTTTCATATTTCGAGTTTGTTTATCTTCTTTGGTGCCGTTTACTTTCTTGGAATACTCACTTATGGTATTGCTGTTCCGTCTGGACTTTTCATTCCTGTGATACTTGCCGGAGCTGCGTACGGTCGTGTTCTCAGTAGACTCTTTGAACCGATCACCCAACTCGACCGAGGACTCTTTTCTCTCCTAGGAGCTGCCTCTTTCCTTGGTGGCACCATGAGAATGACAGTCTCAATCTGTGTTATATTACTCGAACTCACTAATGATCTATATTTACTTCCGCTTGTGATGTTGGTCTTGTTAATCTCAAAATCGGTGGCTGATATTTTCAACAAAGGTGTCTATGATCAAATATTGAAAATCAAAGGACTTCCTTATTTGGAAGCCCATGCCGAACCTTACATGAGGAACATAGCTACGCGCGATGTTGTCTCGGGTCCATTAATGGCCTTTTCTGGCATCGAAAAGGTCGGGAATATCTTACATGTTTTGAATACTACAGGGCACAACGGGTTTCCGGTCATCGATGAACCGCCTTTCGTGGATGCACCAGAGTTGTGTGGACTCGTACTGAGGTCATATCTACTAGTTTTGCTAAAGGCGAAAAATTTTACAAGAGAGAGGGTTTATGCGAATCCGAGTATCATAGAAAATATTTCTGTGTTGGATTTTGGAAAGGCAGGATCCGGAAAGGGAGTTAAACTAGAGGATTTAGATATCCAAGATGAAGATTTGGATATGTATGTTGATCTACATCCGATAACTAATACATCGCCGTACACTGTGGTTGAGACAATGTCACTTGCTAAAGCTGCTATTCTTTTCCGCACGCATGGACTCAGGCACATGTGTGTTGTTCCAAAAAGCCAAGGGAGACCTCCAATTGTCGGGATTCTGACGCGCCACGATTTCATGCCTGAACATGTTTTGGGACTTTACCCTGATATCAAGCATCACAAATGGCACTGA 2358 0.4279 MDKEENLNNGEDVPDIENDGSLNGHDEEIGRLWSQYSERNMTYEEPLLVKRLNTTSQIAIVGSNLCPIESLDYEIFDNEMFNQDWRSRKKIQIFQYVVLKWVFALLIGLGTGLVGLFNNVSVENIAGFKLLLTTSLMSKQRFFEAFLVYAGLNMVLGAAAAALCAFIAPSAAGSGIPEVKAYLNGIDAHSILAPSTLLVKIVGSILGVSAGFVVGKEGPMVHTGACIASFLGQGGSRKYGLTFSWLRLFKNDRDRRDMITCGAAAGVAAAFRSPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAGIQFCSTGKCGLFGEGGLILYDVGSAQVTYSAGDILAVIVLGTVAGILGSIYNFLVDKVVRTYSIINEKGPFFKISLAVAISLLTSCCYYFLPWIATCIPCPPDSTVTCPSVDESGEYKSFQCPPGYYNDLASLFLNTNDDAIRNLFSPKINKEFHISSLFIFFGAVYFLGILTYGIAVPSGLFIPVILAGAAYGRVLSRLFEPITQLDRGLFSLLGAASFLGGTMRMTVSICVILLELTNDLYLLPLVMLVLLISKSVADIFNKGVYDQILKIKGLPYLEAHAEPYMRNIATRDVVSGPLMAFSGIEKVGNILHVLNTTGHNGFPVIDEPPFVDAPELCGLVLRSYLLVLLKAKNFTRERVYANPSIIENISVLDFGKAGSGKGVKLEDLDIQDEDLDMYVDLHPITNTSPYTVVETMSLAKAAILFRTHGLRHMCVVPKSQGRPPIVGILTRHDFMPEHVLGLYPDIKHHKWH 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01546 785 SUPERFAMILY CBS-domain pair 594 768 IPR046342 -
Trre12g01546 785 Gene3D - 591 769 IPR046342 -
Trre12g01546 785 Gene3D Clc chloride channel 92 590 - -
Trre12g01546 785 Pfam Voltage gated chloride channel 157 571 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre12g01546 785 PRINTS Chloride channel signature 577 591 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre12g01546 785 PRINTS Chloride channel signature 489 509 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre12g01546 785 PRINTS Chloride channel signature 200 219 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre12g01546 785 PRINTS Chloride channel signature 264 283 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre12g01546 785 PRINTS Chloride channel signature 521 537 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre12g01546 785 PRINTS Chloride channel signature 169 186 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre12g01546 785 PRINTS Chloride channel signature 539 558 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre12g01546 785 CDD CBS_pair_voltage-gated_CLC_euk_bac 604 770 - -
Trre12g01546 785 MobiDBLite consensus disorder prediction 1 24 - -
Trre12g01546 785 SUPERFAMILY Clc chloride channel 78 593 IPR014743 -
Trre12g01546 785 PRINTS Plant CLC chloride channel signature 285 293 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre12g01546 785 PRINTS Plant CLC chloride channel signature 74 82 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre12g01546 785 PRINTS Plant CLC chloride channel signature 299 309 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre12g01546 785 PRINTS Plant CLC chloride channel signature 317 324 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre12g01546 785 PRINTS Plant CLC chloride channel signature 441 457 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre12g01546 785 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 31 773 - -
Trre12g01546 785 Pfam CBS domain 719 767 IPR000644 -
Trre12g01546 785 CDD ClC_6_like 69 590 - -
Trre12g01546 785 ProSiteProfiles CBS domain profile. 717 779 IPR000644 -
Trre12g01546 785 FunFam Chloride channel ClC3 92 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01546 Trre-Chr12 15311994 15316137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01546 12 779 Ion Channels AT5G49890 70.428 0.0 1080
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01546 K05016 - gmx:100809070 1243.41