Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01526 ATGATCGTAACCGGAGAGAAGCCATTAAAGCGGTTGAAGAGAAACGTAACCGCTGATTTCCACAACTTTGCATCATCAGAAGATAACTTCTCAGGCGAACCATTTCGAACGAATGTACGTTCATTTCTGACGAAGCACGCGCTACTTCCTCCGCCATCGGCACTTTTCCCGCACTTGTTGACGTGGCAGATCATGTTCCGAGTCGGCGGTGGTTTGAATGAGACGGAGGATGGATCGGAACCGGTGGTTTGTCTTGATGTTGTTGAAGAGGATGTGGCTAAATCTAGATCTGTGTACTGCGATCAATGCCGAGTTGTTGGTTGGAGTGGGCACCCGGTCTGCGGGAAACGTTACCATTTTATCATAAAGGCTGATGGAAGCTCTATTGGTGGGTATCACAAGCCATGCATGTGCTGTGGAGATATCTTGCATTTGTCCGAATCCAAGTGCAAGTCTTGCAACCATGTGACAAGTACAGATGATGTTGAAGATTGGGTGTACCAGCAATTGGAGAGTACTACTCATCTTTTACATGGCGTGATTCATACCAATGGTTATGGGCACCTTCTTCGTGTTAATGGTAGAGAAGGTGGCTCAAGATTTCTTTCTGGCTGCCATATCATGGACTTCTGGGATCGGCTCTGCAAGACACTTGGGGTCAGAAAAGTTAGTGTGATGGATGTTTCAAAGAAATATGGGCTGGAGTACCGTCTGATCCATTCCATCACGAGGGGACATTCCTGGTATGGTGAATGGGGTTATCAATTTGGCTCTGGTAGCTATGGTCTCACACAGGAAGCATATAAGATTGCTGTTGAAAGCCTGTCCAACTTACCCTTATCCATCTTCCTCTCCCAGGACCAGAAGCCCCACTCTTGTGTGCAGAGCATCATTTCACATTACCAGTCTTTGTCAGAAAATCAGCTTGTAAATATAAGAGACCTCTTCTGTCTTCTGATGAGTTTGATTCATGATGTTGCCAAGACTTCATTAAAGGTTGGTAGCATCACTGGCAAGAAGCGCAGCTTTGATGCCACGGGATTGTCATGTTCTTGGGAGGAGAATGATGTGATACGTGTTGAGGAAGCCATTCTCAAAGTGCTATGTGCTGTGTCTCGGTCCAATTGGGTGAGCTGGCGTGCTCTTAGGGGTTCTGTCTATAAGGTGGCCTCTGCAGAGCTGCTTGATTACTGCCTTGGAGAACTGGGAGGAAAAGTGGTATTGGGTTCAATGGTTGTTAATACCCGATCCAATCCTGAGACCGGAACTTTTGAGTTCAGACTTGAGGGTGCAAACAGTTCTTACGACGGAAAAACATCAAACAATTATTCTTCAGGCTCAAAGTGTCTATCTAAAGAGAACCTCCTATATGACTTGAAATATTTGTATGGGTATTTGCTTAACTCTCAGATGATGCAGAACTATGTCCCTGAGGGAAAAAGAACTCCTGTAATGAACTCAGCTCAGAAGCTTCTCAACTGTAAGCAGTTAGTTAAAGATTATAGTCTGGAGATGTTGCCAATTACAGATTTGTATAAAATACGCCTCTCATGTCAAGTGGAACTTACAGACGAATCTGAAAATCCCACAATTCCAACAGAACTGGTTGTCCTACCAATAAACGCAACAGTATCTGACCTTAAAACCGAAGCAGCAAATGCTTTTCAAGATGTATATCTCATGTTCAGAAGATTTGTAGTTGATGAGCTAGTTGGCTATAGCAGTGTAGATGATTCCACTCAGGTCAAGCTCTTGTTAGGATCAGCAGAATCAGTTTGTGTCCGAGGAGAATGCATCGGGAAGAACGGATTGAGCATGTTTCGGATGGAACGGGGAGTTGAGGGGTGGACTGTGGATTGCAGCTGTGGGGCTAAGGATGATGATGGGGAGAGAATGTTGGCTTGTGATAAATGTGGAGTGTGGCGACATACCATATGTTCTGACATTCACGATACACAACCTGTTCCCATTCATTTTATTTGTCTAAAATGCCAAAACTCTGACTTGAAACCTAAATCAGCTGGGAATTGCAAAGAAGAAACTCTGACCAACATTAGTGGCAGTAGCAGTTGCTTTAAAAAGGGGTTACCAGTGCCTTCTGATGTTCACTAA 2112 0.4446 MIVTGEKPLKRLKRNVTADFHNFASSEDNFSGEPFRTNVRSFLTKHALLPPPSALFPHLLTWQIMFRVGGGLNETEDGSEPVVCLDVVEEDVAKSRSVYCDQCRVVGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTSTDDVEDWVYQQLESTTHLLHGVIHTNGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLIHSITRGHSWYGEWGYQFGSGSYGLTQEAYKIAVESLSNLPLSIFLSQDQKPHSCVQSIISHYQSLSENQLVNIRDLFCLLMSLIHDVAKTSLKVGSITGKKRSFDATGLSCSWEENDVIRVEEAILKVLCAVSRSNWVSWRALRGSVYKVASAELLDYCLGELGGKVVLGSMVVNTRSNPETGTFEFRLEGANSSYDGKTSNNYSSGSKCLSKENLLYDLKYLYGYLLNSQMMQNYVPEGKRTPVMNSAQKLLNCKQLVKDYSLEMLPITDLYKIRLSCQVELTDESENPTIPTELVVLPINATVSDLKTEAANAFQDVYLMFRRFVVDELVGYSSVDDSTQVKLLLGSAESVCVRGECIGKNGLSMFRMERGVEGWTVDCSCGAKDDDGERMLACDKCGVWRHTICSDIHDTQPVPIHFICLKCQNSDLKPKSAGNCKEETLTNISGSSSCFKKGLPVPSDVH 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01526 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 670 IPR013083 -
Trre12g01526 703 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 16 679 - -
Trre12g01526 703 SUPERFAMILY FYVE/PHD zinc finger 611 668 IPR011011 -
Trre12g01526 703 CDD PHD_MMD1_like 619 664 - -
Trre12g01526 703 SMART PHD_3 619 665 IPR001965 -
Trre12g01526 703 Pfam PHD-finger 620 666 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01526 Trre-Chr12 15082950 15092273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01526 31 664 PHD Transcription Factor Family AT5G22260 28.889 2.34e-81 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre12g01526 PHD 1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01526 K26271 - gmx:100818189 1038.87