Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01525 ATGACAACTGAACCACCATCTCTGGTGGTCGTTTCTCACCCTGAGTACCGATGGGTTTCTCCTTCTACTTCACCTACAAACGTGAATCCAATAGTTTCCTTAACATCCATCGTTGACGATCGTTCGCACCCTCCTTGCCCAATTTTCGCAAGCGGAGTATGCCTGTTGGATTCCATCATGAAAAAGAATTCTGAGCAGAATCGTTTTGGATCTGTGTTCAACAAGCTGTTGAACCAGCTTGGGGAACCTGTTGACTTTGAACTTCCAGACTGGGTTAAGATCAGAACAACACAGTACACCCATATTAAGCGCAATATATATCTCACCAAGAAGAACAAGAGAAAATTCGATCATGGCATATTCTGTTCCTGCGAACCATCATCTGAATCTACTGGTGTATGTGGCAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCTTCAGCCTGCAAATGTGGGATCTCGTGTCTCAACAAAGCTTTTCAGAATCGTCCTGTGAAAAAGATGAAGTTGGTTAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCTTGGGGAGTTTGTCATCGAATATGTTGGAGAAGTCATCGATGATAAAACATGCGAACAGAGGCTTTGGAATATGAAAGATCGTGGGGAAACAAACTTTTACTTATGTGAAATCACTCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCGAGATATATCAATCATAGCTGCTGCCCGAATACTGAGATGCAGAAATGGATAATAGATGGCGAAACCAGAATTGGCATATTTGCAACTCGTGACATACGGAAGGGCGAGCATCTGACTTACGACTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGCCACTGTGGCGCTGTTCAGTGTAGGCGTAAACTGGGTGTGCGCCCTACCAAGCCTAAAGTGTCTTCAGATGCTGCATTAAAATTAGTTGCATATCAGGTTTGTCAGAATGGAGGCATGCAAGGTGTGCATATTGGAAGTTCTCGGATTTTTGAGCAATCAGAATGCTTACACAATTGCGTTGATGAAGTAATCATGATAAAACAACTTGGAAATGTGAGATTTGGGATTATTAAATGGTTTGACGAATATTCCCGAAAACACAAGATCATGTTTGAGGATGGTCGTTCTGAAATTTGTGACATGTCAAAAGAAGATTGGGAACTAGTGAGATTGTGA 1221 0.421 MTTEPPSLVVVSHPEYRWVSPSTSPTNVNPIVSLTSIVDDRSHPPCPIFASGVCLLDSIMKKNSEQNRFGSVFNKLLNQLGEPVDFELPDWVKIRTTQYTHIKRNIYLTKKNKRKFDHGIFCSCEPSSESTGVCGRDCHCGMLLSSCSSACKCGISCLNKAFQNRPVKKMKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEQRLWNMKDRGETNFYLCEITRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIRKGEHLTYDYQFVQFGADQDCHCGAVQCRRKLGVRPTKPKVSSDAALKLVAYQVCQNGGMQGVHIGSSRIFEQSECLHNCVDEVIMIKQLGNVRFGIIKWFDEYSRKHKIMFEDGRSEICDMSKEDWELVRL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01525 406 PANTHER SET DOMAIN PROTEINS 53 330 - -
Trre12g01525 406 Pfam SET domain 179 284 IPR001214 GO:0005515
Trre12g01525 406 SMART shorttest3 117 167 IPR006560 GO:0005634|GO:0042054
Trre12g01525 406 ProSiteProfiles Post-SET domain profile. 291 307 IPR003616 -
Trre12g01525 406 FunFam Histone-lysine N-methyltransferase 86 323 - -
Trre12g01525 406 ProSiteProfiles SET domain profile. 168 285 IPR001214 GO:0005515
Trre12g01525 406 ProSiteProfiles AWS domain profile. 117 166 IPR006560 GO:0005634|GO:0042054
Trre12g01525 406 Gene3D SET domain 87 323 IPR046341 -
Trre12g01525 406 CDD SET_ASHR3-like 169 307 - -
Trre12g01525 406 SMART PostSET_3 291 307 IPR003616 -
Trre12g01525 406 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 93 349 IPR025787 -
Trre12g01525 406 SMART set_7 168 291 IPR001214 GO:0005515
Trre12g01525 406 SUPERFAMILY SET domain 95 303 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01525 Trre-Chr12 15064668 15076925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01525 141 303 C2H2 Transcription Factor Family AT2G23740 34.973 1.70e-23 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre12g01525 SET 4.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01525 - - gmx:100808183 602.438