LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g01512	ATGGAGTGCAATAAGGACGAGGCTACCAGAGCTAAAGAAATTGCTGAGAGGAAGTTCATTGAAAACGACACATCGGGAGCAAAGAAGTTTGCTTTGAAAGCCCAAAAGTTATTTCCTTCCCTTGAGGGTATTCCTCAAATGATAGCAAAACTTGACGTGTATATTTCTGCTGAGAATAAAGTAAAAGGAGTAGCAGATTGGTATGGTATACTTGGTGTGGACCCGCGTGCCGACAATGATACGGTTAGGAAACAATATATGAAGCTAGCTCTCATGCTTCACCCAGACAAGAACAAGTCCGTCGGTGCTGATGGGGCCTTTAAACATGTTTCAGAGGCGTGGAGTATACTGTCTGATAAGGCAAGAAGGGCAGCTTATGATGAAAAGATTAATGTAAAAGCACAGAAAGGCTCAACCATTTTTGGCGGTTCATCAGGAAAAGCGGCGGCAAATGGGGTGAACGATGGTAAGAAGGAATCCCCTTCAGGTTCAAGGACTCGGAAAAGTCCTGCCAAAGAAGAAACACCATCTCCCTCCAATAAACCCCCTTCAGGTTCAAGGACTCGGAAAAGTCCTGCCAAAGAAGAAACACCATCTCCCTCTAATAAACCCCCTTCAGGTTCAAGGACTCGGAAAAGTCCTGCAAAAGAAGAAACATCATCGTCCTCAAATAAACCCCAATACACATTTTGGACTACTTGCCAACATTGCAAAATGCAATACGAGTATGTCCGATTGTATCTTAACCTGAAGCTCGCTTGTCCTAGATGCCGTGAACCATTTTTGGCGTTAGAAACTAATCCGCCTGCTGCAAGTGGTATCAGACCTTGGGATACATTGAATTTTATGCAAAAGCCCGATCACCAAGGACCTCATAAAAGCAAATCTAATGCTAGAAAGAACAACATGGCAGCTCCATTCTCGAATTCTGGCGTTTCTAATGTGGCTCAAGATGCAAATGTGGTTCAGAAGCCATATCATAAGGTGAAGCGAGATCGTGAGGAGGCACAAGGCGCTACAAAAAAGGAAGAGGCTTTAGGAAGGAAGAAGAAAAGGGGGGGCATGGAGGGAAATGGAGCGTGCAGCGGTATCAAGAACTTCAACTGTACTAGAGATCTCTCGCCAGTTGAACTTCGGAATCTTCTTGTCGAGAAAGCTAGAAAAGAAATTAGCAAGAAACTCAGCGAGTTCCAGTCAAATACTGCTGATAAATCTGTGGAGAAAAAGAGTGGAGATTGCTTCCAGAAAGAAGACCGGAAAGGAAAATCTTCAGCTAGAAACTCTGACTGA	1290	0.4403	MECNKDEATRAKEIAERKFIENDTSGAKKFALKAQKLFPSLEGIPQMIAKLDVYISAENKVKGVADWYGILGVDPRADNDTVRKQYMKLALMLHPDKNKSVGADGAFKHVSEAWSILSDKARRAAYDEKINVKAQKGSTIFGGSSGKAAANGVNDGKKESPSGSRTRKSPAKEETPSPSNKPPSGSRTRKSPAKEETPSPSNKPPSGSRTRKSPAKEETSSSSNKPQYTFWTTCQHCKMQYEYVRLYLNLKLACPRCREPFLALETNPPAASGIRPWDTLNFMQKPDHQGPHKSKSNARKNNMAAPFSNSGVSNVAQDANVVQKPYHKVKRDREEAQGATKKEEALGRKKKRGGMEGNGACSGIKNFNCTRDLSPVELRNLLVEKARKEISKKLSEFQSNTADKSVEKKSGDCFQKEDRKGKSSARNSD	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g01512	429	MobiDBLite	consensus disorder prediction	296	311	-	-
	Trre12g01512	429	SUPERFAMILY	Chaperone J-domain	61	129	IPR036869	-
	Trre12g01512	429	PRINTS	DnaJ domain signature	68	86	IPR001623	-
	Trre12g01512	429	PRINTS	DnaJ domain signature	102	122	IPR001623	-
	Trre12g01512	429	PRINTS	DnaJ domain signature	86	101	IPR001623	-
	Trre12g01512	429	PANTHER	BNAC03G44070D PROTEIN	1	422	-	-
	Trre12g01512	429	Pfam	DnaJ domain	66	127	IPR001623	-
	Trre12g01512	429	MobiDBLite	consensus disorder prediction	324	355	-	-
	Trre12g01512	429	ProSitePatterns	Nt-dnaJ domain signature.	107	126	IPR018253	-
	Trre12g01512	429	MobiDBLite	consensus disorder prediction	138	227	-	-
	Trre12g01512	429	MobiDBLite	consensus disorder prediction	160	174	-	-
	Trre12g01512	429	MobiDBLite	consensus disorder prediction	402	429	-	-
	Trre12g01512	429	MobiDBLite	consensus disorder prediction	286	311	-	-
	Trre12g01512	429	MobiDBLite	consensus disorder prediction	324	364	-	-
	Trre12g01512	429	MobiDBLite	consensus disorder prediction	393	429	-	-
	Trre12g01512	429	Gene3D	DnaJ domain	64	172	IPR036869	-
	Trre12g01512	429	SMART	dnaj_3	65	122	IPR001623	-
	Trre12g01512	429	CDD	DnaJ	66	119	IPR001623	-
	Trre12g01512	429	ProSiteProfiles	dnaJ domain profile.	66	130	IPR001623	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g01512	Trre-Chr12	14913447	14914736	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g01512	4	136	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	41.007	1.05e-27	111

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g01512	-		-	lja:Lj2g3v0520120.1	455.292