Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01511 ATGGAGTGCAATAAGGACGAGGCTACCAGAGCTAAAGAAATTGCTGAGAGGAAGTTCAATGAAAAGGACACATCGGGAGCAAAGAAGTTTGCTTTGAAAGCCCAAAATTTATTTCCTTCCCTTGAGGGTATTCCTCAAATGATAGCAACACTTGACGTGTATATTGCCGCTGAGAATAAAGTAAAAGGAGAAGCAGATTGGTATGGTATACTTGGTGTTAATCCGCGTGCTGATGATGACACAGTTAGAAAACATTATAGGAAGCTAGCTCTCATGCTTCACCCAGACAAGAACAAGTCTGTCGGAGCCGATGGGGCCTTTAAATTTATTTCAGAGGCGTGGAGTATACTGTCCGATAAGGCTAGAAGGGCAGCTTATGATGAAAAGATAAATGCAAAAGCACAGAAAGGTTCAACCATTTTCGGCGGTTCATCAGCAAAAGCGGCAGCAAATGGGGCTAACAATAGTAAAAAGAAGCCCCCTTCAAGTTCAAGGACTCAGAAAAATACTGCAAAAGAACAAGCTTCTTCTGCCAATAAATCGAAATCTACATTCTGGACTACTTGTCATCGCTGTAAAATGCAATACGAGTATCTCCGAATGTATCTTAACCTTAAGCTCGTGTGTCCTAGCTGCCACGAAGCTTTTCTGGCTTTAGAAACTAACCCGCCTCCTGCAAGTGGTATCAGACCCGGCGCTACGTTGAATTTTAAGCAAAAGCCCGATCACCAAGGACCTCATAAAAGCAAATCTAATGCTGGAAAAAACAACATGTCAGCTCCAAATGTTGGAGCAGGTTCTAACAAGAATAGTTTCCAGTGGGCTCCATTCTCGAATTCTGGCGTTTCTAATGTGGCTCAAGCTGCAAATGTGGTTCAGCAGGCATATCATAAGGTGAAGCGAGATCGTGAGGAGGCACAAGCCGCTACCAAAAAGGAAGAGGCTTTAAGAAGGAAGCAGAATGTTTCCAAAAAAGGTTACTTTAATCCAGCTAAAAGGAAAAGGGGGGGCATGGAGGGAAATGGAGCATCTAACCTAGGCAATGGTATGAAGAAGTTCAACTCTACTAGAGATCTCCCCCCAGTTGAACTTCAGAATCTTCTTGTTGAGAAAGCTAGAAAAGAAATTAGCAAGAAACTCAGAGAGTTTCAGTCAAATACTGTTGATAAATCAGTGGCGAAAAAGAGTGGAGATTGCTTCCAGAAAGAAGACCGGAAAGGAGAATTTTCAGCAAGAAACTCTGAGATCTGTACTCGAAATAGCATTGGGAAGTCAGAAGGTGCGAAGAATAGTTTGCAGGCTAGCACGTCATTTGCAGCTCCTACAATTGATAGCAATTGCATGGAAATTTTGGATTCACTGCTAGTAGATTTTCCTGATCCTGATTTTCATGATTTTTTCAAGGATCGAACTGAAAGGTCTTTTGGTGAAAATCAAGTATGGACTGCATATGAAGGTGATGATGGGATGCCTCGACGTTATGCTCTGATTCACAAAGTGATCTCTCTGAATCCATTCAAGTTGCAGATCAGTTGGCTCCATCCAAATACCAACAGCGGCGAACCAGGCCACCAAAATTGGATTGCGTTAGGCTTTTCAAAAACTTGTGGGGATTTCAGGATAGGTAAACGCGAGATCTATGACTCGATCAATTATTTTTCTCAAAAGGTTAGGTGGATAAAAGGTAACAATGGAGCTATTTGTATATATCCCAAAAAAGGAGAGGTTTGGGCCATCTATAGCAATTGGTCTCCTAACTGGAATGAGCTAATATCAGGTGATGTGATACACAAGTTTATAATGGTTGAAGTACTTGAGGATTTTGTCGAAGAACACGGGGTAACTGTTATTCCTTTGGTCAAGGTGGCAGGGTTCAAGGCAGTATTTCACCACCACTTTGATGAGAAAGTGATCAAAATCATTCCGAGGAAGGAGATGCTTCGATTCTCTCATCAGGTACCTTCATATGTACTTACTGGCGAAGAAGCTGCTAATGCTCCAAAAGGTTGCAGGGTGCTGGACCCAGCTGCTACTCCATGTGAACTTCTTGAGGTAATAAAAGTCGCGCAGGAGGAAAGCATAGTGGACAACGTGGATGGTATCGCTGAAGAAGCTATTTGTGAGGAAATGGCCAGTGATATGGGACAACTTGGGGGAGCAAAGGAGGGATTGAAGAAAGTTATTCATAAAATGGAAACTTCAGAAGAGGAACAAGGGAAGAAGATATGCATAGGCTTGTAG 2241 0.4244 MECNKDEATRAKEIAERKFNEKDTSGAKKFALKAQNLFPSLEGIPQMIATLDVYIAAENKVKGEADWYGILGVNPRADDDTVRKHYRKLALMLHPDKNKSVGADGAFKFISEAWSILSDKARRAAYDEKINAKAQKGSTIFGGSSAKAAANGANNSKKKPPSSSRTQKNTAKEQASSANKSKSTFWTTCHRCKMQYEYLRMYLNLKLVCPSCHEAFLALETNPPPASGIRPGATLNFKQKPDHQGPHKSKSNAGKNNMSAPNVGAGSNKNSFQWAPFSNSGVSNVAQAANVVQQAYHKVKRDREEAQAATKKEEALRRKQNVSKKGYFNPAKRKRGGMEGNGASNLGNGMKKFNSTRDLPPVELQNLLVEKARKEISKKLREFQSNTVDKSVAKKSGDCFQKEDRKGEFSARNSEICTRNSIGKSEGAKNSLQASTSFAAPTIDSNCMEILDSLLVDFPDPDFHDFFKDRTERSFGENQVWTAYEGDDGMPRRYALIHKVISLNPFKLQISWLHPNTNSGEPGHQNWIALGFSKTCGDFRIGKREIYDSINYFSQKVRWIKGNNGAICIYPKKGEVWAIYSNWSPNWNELISGDVIHKFIMVEVLEDFVEEHGVTVIPLVKVAGFKAVFHHHFDEKVIKIIPRKEMLRFSHQVPSYVLTGEEAANAPKGCRVLDPAATPCELLEVIKVAQEESIVDNVDGIAEEAICEEMASDMGQLGGAKEGLKKVIHKMETSEEEQGKKICIGL 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01511 746 Gene3D DnaJ domain 63 187 IPR036869 -
Trre12g01511 746 PANTHER BNAC03G44070D PROTEIN 1 679 - -
Trre12g01511 746 Pfam DnaJ domain 66 127 IPR001623 -
Trre12g01511 746 SUPERFAMILY Chaperone J-domain 60 126 IPR036869 -
Trre12g01511 746 Coils Coil 299 319 - -
Trre12g01511 746 Pfam Domain of unknown function (DUF3444) 456 662 IPR024593 -
Trre12g01511 746 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Trre12g01511 746 MobiDBLite consensus disorder prediction 250 267 - -
Trre12g01511 746 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Trre12g01511 746 SMART dnaj_3 65 122 IPR001623 -
Trre12g01511 746 MobiDBLite consensus disorder prediction 144 180 - -
Trre12g01511 746 MobiDBLite consensus disorder prediction 327 347 - -
Trre12g01511 746 MobiDBLite consensus disorder prediction 222 267 - -
Trre12g01511 746 CDD DnaJ 66 119 IPR001623 -
Trre12g01511 746 PRINTS DnaJ domain signature 68 86 IPR001623 -
Trre12g01511 746 PRINTS DnaJ domain signature 102 122 IPR001623 -
Trre12g01511 746 PRINTS DnaJ domain signature 86 101 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01511 Trre-Chr12 14896954 14899194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01511 4 336 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.825 3.05e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01511 - - lja:Lj2g3v0520120.1 949.118