Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01497 ATGGTTTTTGTTTTAAGCCCAAAAGGTGTTTGTGGAAATGCTGAGCTGAAAGCACTTTTGGATTTAAAAGCTAATTTAGATCCAGAAGGACATTTTTTGTCATCATGGAAAATGAATGGTAACCCTTGTGATGATTCATTTGAAGGTGTAGCTTGTAATGAAAAGGGTCAAGTTGCAAATGTTTCATTGCAAGGAAAAGGACTTTCTGGTAAATTATCACCAGCTATTGGTGATTTGAAGCATTTGACAGGACTTTATTTGCATTACAACTCTTTGTATGGTGATATACCAAGAGAAATTGCTAATCTAACTCAGCTTAGTGATTTGTATTTGAATGTGAATCATTTATCTGGTGAAATCCCATCTGAGATTGGTAAAATGGAGAATCTTCAAGTTTTGCAGCTTTGTTATAACCAGTTAACAGGAAGCATACCTACTAAGCTTGGTGATTTGAAAAAGCTTAGTGTTCTTGCTCTACAGTCAAACAAGTTAGCTGGAGCTATCCCTGCTAGTTTAGGTGACTTAGGAATGTTGATGAGACTAGATTTGAGTTCCAATAATCTTTTTGGTTCAATTCCAACTAAACTAGCTGAAGCTCCTTTTCTTCAAGTTCTTGATGTTCACAACAATACTCTTTCTGGAAATGTACCTCCTGCTCTGAAGAGACTAGATGACAAATTTGTTTATGAATATAATTTGGGACTTTGCGGAGATGGATTTTCATCCTTGAAAGCTTGCAATGCATCAGATCATGCCAATCCCAACAGGCCTGAACCTTATGGAGCAGGAGTTGGTGGTATTCCAAAGGAAATCCCAGAAACCGCAGATATAAAGTTGCCTTGTAATACAACTCGGTGCCAAAATTCGTCGAAATCGAAAAAAACAGCGTCTATTACTGTCGGCATAGTTCTGGCGACAATTGCATTGTCAGCAATAGGCATTCTAAGTGTTACAATGTATCGTCGGCGAAAGCAAAAGCTTGGTAGTGCGTTTGATATCACTGAAAGCCGTCTAAGTACGGATCAGGCAAAAGGTATATACAGGAAAAACGGATCTCCTTTGGTTAGTCTTGAGTATGCAAATGGATGGGATCCTTTGGCTGATAGTAGAAATTTCAATGGAGATAGGCAAGATATGTTTCAAAGTTTCAGGTTCAACTTGGAAGAAGTAGAGTCGGCGACTCAGTATTTCTCGGAGTTGAATTTGTTGGGTAAGAGTAACTTTAGTGCAACATATAAAGGAGTTTTAAGAGATGGATCTATCGTTGCTATTAAGAGCATAAGTAAAACTAGCTGCAAATCTGACGAAGCCGAGTTTCTTAAAGGATTGAACATTTTGACATCATTGAGGAATGATAATTTGGTTAGATTGAGAGGATTTTGTTGTTCAAGGGGACGTGGCGAATGCTTCTTGGTTTATGATTTTGTTTCAAATGGAAATTTGTCACAATATCTCGATGTGAAGGAAGGTGACGGTGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTTAAAGGAGTTGCTAAAGGCTTAGCTTATTTGCACAAATACAAACCAAACAAACCAGCTCTGGTTCACCAAAACATCTCAGCTGACAAAGTACTCATCGATCAGCGACAGAATCCGGTGCTCTCAGATTCTGGCCTATATAAGCTTCTCACAAATGATATTGTCTTCTCTTCACTAAAGGGTAGTGCCGCGAAGGGGTACCTAGCTCCAGAATACACTACTACAGGCCGGTTCACAGAAAAAAGCGATGTTTATGCTTTCGGGATCCTTCTTTTCCAGATACTCACTGGTAAGCAAAAGATCACTAGCTCACTTTGCCTTGCCGCAGAATCCTTCAAATTCCAAGAATTCATTGACCAGAATCTCCATGGAAGATTCTTCGAGTACGAGGCAGCTAAACTAGCAAGAATGGCAATCCTTTGTTCACATGACATTCCCTTTGAGAGGCCAACCATGGAAGCTATTGTTCAAGAACTTGGCAATTGTAGTAGTTGTCTTTGA 2010 0.391 MVFVLSPKGVCGNAELKALLDLKANLDPEGHFLSSWKMNGNPCDDSFEGVACNEKGQVANVSLQGKGLSGKLSPAIGDLKHLTGLYLHYNSLYGDIPREIANLTQLSDLYLNVNHLSGEIPSEIGKMENLQVLQLCYNQLTGSIPTKLGDLKKLSVLALQSNKLAGAIPASLGDLGMLMRLDLSSNNLFGSIPTKLAEAPFLQVLDVHNNTLSGNVPPALKRLDDKFVYEYNLGLCGDGFSSLKACNASDHANPNRPEPYGAGVGGIPKEIPETADIKLPCNTTRCQNSSKSKKTASITVGIVLATIALSAIGILSVTMYRRRKQKLGSAFDITESRLSTDQAKGIYRKNGSPLVSLEYANGWDPLADSRNFNGDRQDMFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSIVAIKSISKTSCKSDEAEFLKGLNILTSLRNDNLVRLRGFCCSRGRGECFLVYDFVSNGNLSQYLDVKEGDGEVLEWSTRVSIVKGVAKGLAYLHKYKPNKPALVHQNISADKVLIDQRQNPVLSDSGLYKLLTNDIVFSSLKGSAAKGYLAPEYTTTGRFTEKSDVYAFGILLFQILTGKQKITSSLCLAAESFKFQEFIDQNLHGRFFEYEAAKLARMAILCSHDIPFERPTMEAIVQELGNCSSCL 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01497 669 Gene3D Phosphorylase Kinase; domain 1 368 475 - -
Trre12g01497 669 FunFam Leucine-rich repeat receptor-like kinase 14 123 - -
Trre12g01497 669 FunFam Protein NSP-INTERACTING KINASE 2 368 475 - -
Trre12g01497 669 Pfam Protein tyrosine and serine/threonine kinase 401 662 IPR001245 GO:0004672|GO:0006468
Trre12g01497 669 FunFam Protein NSP-INTERACTING KINASE 2 125 247 - -
Trre12g01497 669 Gene3D Ribonuclease Inhibitor 128 238 IPR032675 -
Trre12g01497 669 Pfam Leucine rich repeat N-terminal domain 13 53 IPR013210 -
Trre12g01497 669 Gene3D Ribonuclease Inhibitor 14 126 IPR032675 -
Trre12g01497 669 Gene3D Transferase(Phosphotransferase) domain 1 476 668 - -
Trre12g01497 669 SUPERFAMILY Protein kinase-like (PK-like) 375 662 IPR011009 -
Trre12g01497 669 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 61 663 - -
Trre12g01497 669 FunFam Protein NSP-INTERACTING KINASE 2 476 666 - -
Trre12g01497 669 SUPERFAMILY L domain-like 11 221 - -
Trre12g01497 669 ProSiteProfiles Protein kinase domain profile. 397 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01497 Trre-Chr12 14801159 14804702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01497 2 510 Miscellaneous Gene Families AT4G22730 56.046 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trre12g01497 PK_Tyr_Ser-Thr 1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01497 - - gmx:100789253 1154.04