Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01496 ATGGGTTGTTCAAAATTCATTTTTCTTATCTTTTCTCTAATGGTTTTTGTTTTAAGCCCAAAAGGTGTTTGTGGAAATGCTGAGCTGAAAGCACTTTTGGATTTAAAAGCTAATTTAGATCCAGAAGGACATTTTTTGTCATCATGGAAAATGAATGGTAACCCTTGTGATGATTCATTTGAAGGTGTAGCTTGTAATGAAAAGGGTCAAGTTGCAAATGTTTCATTGCAAGGAAAAGGACTTTCTGGTAAATTATCACCAGCTATTGGTGATTTGAAGCATTTGACAGGACTTTATTTGCATTACAACTCTTTGTATGGTGATATACCAAGAGAAATTGCTAATCTAACTCAGCTTAGTGATTTGTATTTGAATGTGAATCATTTATCTGGTGAAATCCCATCTGAGATTGGTAAAATGGAGAATCTTCAAGTTTTGCAGCTTTGTTATAACCAGTTAACAGGAAGCATACCTACTAAGCTTGGTGATTTGAAAAAGCTTAGTGTTCTTGCTCTACAGTCAAACAAGTTAGCTGGAGCTATCCCTGCTAGTTTAGGTGACTTAGGAATGTTGATGAGACTAGATTTGAGTTCCAATAATCTTTTTGGTTCAATTCCAACTAAACTAGCTGAAGCTCCTTTTCTTCAAGTTCTTGATGTTCACAACAATACTCTTTCTGGAAATGTACCTCCTGCTCTGAAGAGACTAGATGACAAATTTGTTTATGAATATAATTTGGGACTTTGCGGAGATGGATTTTCATCCTTGAAAGCTTGCAATGCATCAGATCATGCCAATCCCAACAGGCCTGAACCTTATGGAGCAGGAGTTGGTGGTATTCCAAAGGAAATCCCAGAAACCGCAGATATAAAGTTGCCTTGTAATACAACTCGGTGCCAAAATTCGTCGAAATCGAAAAAAACAGCGTCTATTACTGTCGGCATAGTTCTGGCGACAATTGCATTGTCAGCAATAGGCATTCTAAGTGTTACAATGTATCGTCGGCGAAAGCAAAAGCTTGGTAGTGCGTTTGATATCACTGAAAGCCGTCTAAGTACGGATCAGGCAAAAGGTATATACAGGAAAAACGGATCTCCTTTGGTTAGTCTTGAGTATGCAAATGGATGGGATCCTTTGGCTGATAGTAGAAATTTCAATGGAGATAGGCAAGATATGTTTCAAAGTTTCAGGTTCAACTTGGAAGAAGTAGAGTCGGCGACTCAGTATTTCTCGGAGTTGAATTTGTTGGGTAAGAGTAACTTTAGTGCAACATATAAAGGAGTTTTAAGAGATGGATCTATCGTTGCTATTAAGAGCATAAGTAAAACTAGCTGCAAATCTGACGAAGCCGAGTTTCTTAAAGGATTGAACATTTTGACATCATTGAGGAATGATAATTTGGTTAGATTGAGAGGATTTTGTTGTTCAAGGGGACGTGGCGAATGCTTCTTGGTTTATGATTTTGTTTCAAATGGAAATTTGTCACAATATCTCGATGTGAAGGAAGGTGACGGTGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTTAAAGGAGTTGCTAAAGGCTTAGCTTATTTGCACAAATACAAACCAAACAAACCAGCTCTGGTTCACCAAAACATCTCAGCTGACAAAGTACTCATCGATCAGCGACAGAATCCGGTGCTCTCAGATTCTGGCCTATATAAGCTTCTCACAAATGATATTGTCTTCTCTTCACTAAAGGGTAGTGCCGCGAAGGGGTACCTAGCTCCAGAATACACTACTACAGGCCGGTTCACAGAAAAAAGCGATGTTTATGCTTTCGGGATCCTTCTTTTCCAGATACTCACTGGTAAGCAAAAGATCACTAGCTCACTTTGCCTTGCCGCAGAATCCTTCAAATTCCAAGAATTCATTGACCAGAATCTCCATGGAAGATTCTTCGAGTACGAGGCAGCTAAACTAGCAAGAATGGCAATCCTTTGTTCACATGACATTCCCTTTGAGAGGCCAACCATGGAAGCTATTGTTCAAGAACTTGGCAATTGTAGTAGTTGTCTTTGA 2049 0.3885 MGCSKFIFLIFSLMVFVLSPKGVCGNAELKALLDLKANLDPEGHFLSSWKMNGNPCDDSFEGVACNEKGQVANVSLQGKGLSGKLSPAIGDLKHLTGLYLHYNSLYGDIPREIANLTQLSDLYLNVNHLSGEIPSEIGKMENLQVLQLCYNQLTGSIPTKLGDLKKLSVLALQSNKLAGAIPASLGDLGMLMRLDLSSNNLFGSIPTKLAEAPFLQVLDVHNNTLSGNVPPALKRLDDKFVYEYNLGLCGDGFSSLKACNASDHANPNRPEPYGAGVGGIPKEIPETADIKLPCNTTRCQNSSKSKKTASITVGIVLATIALSAIGILSVTMYRRRKQKLGSAFDITESRLSTDQAKGIYRKNGSPLVSLEYANGWDPLADSRNFNGDRQDMFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSIVAIKSISKTSCKSDEAEFLKGLNILTSLRNDNLVRLRGFCCSRGRGECFLVYDFVSNGNLSQYLDVKEGDGEVLEWSTRVSIVKGVAKGLAYLHKYKPNKPALVHQNISADKVLIDQRQNPVLSDSGLYKLLTNDIVFSSLKGSAAKGYLAPEYTTTGRFTEKSDVYAFGILLFQILTGKQKITSSLCLAAESFKFQEFIDQNLHGRFFEYEAAKLARMAILCSHDIPFERPTMEAIVQELGNCSSCL 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01496 682 Gene3D Phosphorylase Kinase; domain 1 381 488 - -
Trre12g01496 682 Pfam Protein tyrosine and serine/threonine kinase 414 675 IPR001245 GO:0004672|GO:0006468
Trre12g01496 682 ProSiteProfiles Protein kinase domain profile. 410 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01496 682 SUPERFAMILY Protein kinase-like (PK-like) 388 675 IPR011009 -
Trre12g01496 682 FunFam Protein NSP-INTERACTING KINASE 2 489 679 - -
Trre12g01496 682 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Trre12g01496 682 Gene3D Ribonuclease Inhibitor 141 251 IPR032675 -
Trre12g01496 682 Gene3D Transferase(Phosphotransferase) domain 1 489 681 - -
Trre12g01496 682 Gene3D Ribonuclease Inhibitor 27 139 IPR032675 -
Trre12g01496 682 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 676 - -
Trre12g01496 682 SUPERFAMILY L domain-like 24 234 - -
Trre12g01496 682 FunFam Protein NSP-INTERACTING KINASE 2 138 260 - -
Trre12g01496 682 FunFam Protein NSP-INTERACTING KINASE 2 381 488 - -
Trre12g01496 682 FunFam Leucine-rich repeat receptor-like kinase 27 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01496 Trre-Chr12 14801159 14804741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01496 9 523 Miscellaneous Gene Families AT4G22730 55.598 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trre12g01496 PK_Tyr_Ser-Thr 1.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01496 - - gmx:100789253 1160.98