Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01478 ATGGAAGAAAGAGGGATTTTTAAGGATAATGAGGCAACACAGAGTTTGAACGTGATTCAAAATTCTTTGCCTCTTATTGGGCCTGCAGTGGAGTTGCCGATGCCAACTCTGGCGTTTGCTGCGGCGGCGACGCCTGATAGTGCAGAGGGACATAAGAGGGATGGGCCTGAGCAAAATAAGGATCACAGAGACGAACCTAATAAATCAATCAATCACAAGAAATGTCTCCGTCCGCTTCAATCGCCGATCGCCATCTCAGGGCTGACCATCACCGCATCACAATTCAGATCTTGGAATTTCAAGTTACCGTGGTTCCCATTTAACACCTCAGAACTTTACAGTGAATTCCGGCGAGTCATTAACTCTGGACATGGCACTATTTCAAGCTTCACAATTCGTAAGTCGGGTTCTCCTGACGAGACTAATAAATATGAGACGGGCTCGTTTTTGCCAAGTAATACTGGTTTTTATAAAAGACGTGGTTCGGTGGCTGTCTCTTTGGCTTTTCGAAATGGTCAAATTATTGGGGGTAAACTGGCTGGTCCACTGGTAGCTGCAGGTCCTGTGCAGGTTATGGTATTCAGCTTTCGTCCTAATATGCCTCGCATGCCGCGGGAGCATAAGAAAGAAAAGGAGAAGCGAAAGAAAGGCAAGGAGATTGTCTAA 666 0.461 MEERGIFKDNEATQSLNVIQNSLPLIGPAVELPMPTLAFAAAATPDSAEGHKRDGPEQNKDHRDEPNKSINHKKCLRPLQSPIAISGLTITASQFRSWNFKLPWFPFNTSELYSEFRRVINSGHGTISSFTIRKSGSPDETNKYETGSFLPSNTGFYKRRGSVAVSLAFRNGQIIGGKLAGPLVAAGPVQVMVFSFRPNMPRMPREHKKEKEKRKKGKEIV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01478 221 SUPERFAMILY AF0104/ALDC/Ptd012-like 119 202 - -
Trre12g01478 221 Pfam Plants and Prokaryotes Conserved (PCC) domain 120 196 IPR005175 -
Trre12g01478 221 Gene3D - 115 216 - -
Trre12g01478 221 MobiDBLite consensus disorder prediction 200 221 - -
Trre12g01478 221 MobiDBLite consensus disorder prediction 43 73 - -
Trre12g01478 221 CDD DUF296 122 196 IPR005175 -
Trre12g01478 221 MobiDBLite consensus disorder prediction 47 72 - -
Trre12g01478 221 MobiDBLite consensus disorder prediction 201 221 - -
Trre12g01478 221 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 120 211 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01478 Trre-Chr12 14610689 14618819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01478 119 216 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 40.187 6.02e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01478 - - gmx:102667678 78.1814