Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01475 ATGAGAATTTCAGAAATCAAAACCACAAATCCAATGAGAAATCAGAAGAGGGAGAGAATAGACCTGAGAGGGAGAGACAGAGAGAGTCAGTGCAAATCGAGCGGCGGTGGCCGTTGGATGGGAGAACAGCAGTTGGAAGTTGATGGAATTTTTGAACTGCTTTCTTTGGATGGTTTGTTTTTGCCAAGTAGTGCTGGCATTTATAAAAGACGCGGTTCGATGGCTGTCTCTTTGGCATTTCCAGATGGTCAAACTACTGCGGGTCAACTTGCTGGTCCACTGGTAGCTGCAGGTCCTGTGCAGGTTGTGGTTGCGAGTTTTCAACCAGAGCAGCAGAAATCAAAGAAGCAAATGACCGATCTTGGTGTAATGAAGCCTATCATGTCACCGGCCGGCTTAAAGTCTGCTTTTTTCAGCAATGGCCAAGGCTCTGGCAACTCATCATCATCTGCGGATGACGAGCATGTCTAA 471 0.4692 MRISEIKTTNPMRNQKRERIDLRGRDRESQCKSSGGGRWMGEQQLEVDGIFELLSLDGLFLPSSAGIYKRRGSMAVSLAFPDGQTTAGQLAGPLVAAGPVQVVVASFQPEQQKSKKQMTDLGVMKPIMSPAGLKSAFFSNGQGSGNSSSSADDEHV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01475 156 Pfam Plants and Prokaryotes Conserved (PCC) domain 42 108 IPR005175 -
Trre12g01475 156 MobiDBLite consensus disorder prediction 11 32 - -
Trre12g01475 156 SUPERFAMILY AF0104/ALDC/Ptd012-like 44 111 - -
Trre12g01475 156 CDD DUF296 45 107 IPR005175 -
Trre12g01475 156 MobiDBLite consensus disorder prediction 1 39 - -
Trre12g01475 156 Gene3D - 30 127 - -
Trre12g01475 156 MobiDBLite consensus disorder prediction 135 150 - -
Trre12g01475 156 MobiDBLite consensus disorder prediction 135 156 - -
Trre12g01475 156 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 126 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01475 Trre-Chr12 14598940 14600252 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01475 30 126 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 48.039 1.94e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01475 - - mtr:11422923 108.997