Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01472 ATGGAAGAAAGAGAGATTTTTGGTTCTGGGCATGCTGTTAATGTTAACCAGGTCCCACAGAGATTCAATTTAGCTCAGAATTCATTGAATTTTTCTGGGCCCACAGGAGATTTGCCGGCTGCGGCGAGTGGACCGGCTGCGGCTGCCGGTGGTATGGAGGTAAAGAAGAAGAGGGGTAGGCCTAGAAAGTCTGAATCTGGAAGTAAGCCGGCGTTGTCGCCTATGCCGATTTCGGCCTCCATTCCATTGACTGGAGATTTCTCTGGTTGGAAAAGTGGTGGAGGGAAGCCCTTTGAATCAATCAAAAAGCCTTTGAAGTTAAATGATTTTGATGAAGATGATGGAACAGCTTCCCCTGGTTCCAATTTCAAAACTCACGTGCTTACAGTAAATTCCGGAGAGGATGTCTCGATGAAAATAATGTCTCTCTCTCAACAAGAATATCATACTATATCCATTCTCTCTGCGACTGGCACAATTTCGAATGTCACACTCCGCCAGTCAGATGCTAGTGGCGGTACTTCAACGTATGAGGGAGTTTTCGAGATTCTTTCCTTGAGCGGCTCATTTGTGCCAACCGAGAATGGACTGACAAAGAGCAGAGCTGGTAGAATGAGTGTCTCATTGGCGGGTCCAAATGGTCGTGTTTTTGGGGGTGCACTGGCTGGTTTGCTTGTAGCTGCTGGTTCTGTGCAGGTTGTGGTTGCGAGTTTTCAACCAGAGCAGCAGAAACCAAAGAAGCAAAGGACCGATTATACGTCACTACCTGCCCCTCCTACATCATCTCATATTAATAATCATGTTTCTGCTGAACAATTGAAACCTATCATGTCACCGGCCGGCTTTAACTTTGCTTCTTTCGGCAATGGCCAAGGCTCTGGCAACTCATCATCATCCGCAGATGACGAGCATGTCTAA 918 0.4684 MEEREIFGSGHAVNVNQVPQRFNLAQNSLNFSGPTGDLPAAASGPAAAAGGMEVKKKRGRPRKSESGSKPALSPMPISASIPLTGDFSGWKSGGGKPFESIKKPLKLNDFDEDDGTASPGSNFKTHVLTVNSGEDVSMKIMSLSQQEYHTISILSATGTISNVTLRQSDASGGTSTYEGVFEILSLSGSFVPTENGLTKSRAGRMSVSLAGPNGRVFGGALAGLLVAAGSVQVVVASFQPEQQKPKKQRTDYTSLPAPPTSSHINNHVSAEQLKPIMSPAGFNFASFGNGQGSGNSSSSADDEHV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01472 305 Gene3D - 124 259 - -
Trre12g01472 305 ProSiteProfiles PPC domain profile profile. 120 258 IPR005175 -
Trre12g01472 305 MobiDBLite consensus disorder prediction 284 305 - -
Trre12g01472 305 MobiDBLite consensus disorder prediction 27 80 - -
Trre12g01472 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 291 IPR039605 GO:0003680
Trre12g01472 305 MobiDBLite consensus disorder prediction 284 299 - -
Trre12g01472 305 SUPERFAMILY AF0104/ALDC/Ptd012-like 121 250 - -
Trre12g01472 305 MobiDBLite consensus disorder prediction 240 264 - -
Trre12g01472 305 Pfam Plants and Prokaryotes Conserved (PCC) domain 124 239 IPR005175 -
Trre12g01472 305 CDD DUF296 124 238 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01472 Trre-Chr12 14581359 14585560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01472 47 249 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 55.022 2.61e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01472 - - mtr:11422923 457.218