Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01463 ATGGCTTTTAGTTTTTCTGCCTATGCTTCTTCCCAATCTCTTAAAAAACACGACGTTTTTATCAGTTTTAGGGGCGAAGACACCCGCGCAAACTTCACAAGCTTTCTTCATGATGCTTTGACTAGAAGCTACGTCCAAACATACATAGACTACAACATTGAAAAGGGAGAAGAGGTTTGGGAAGAACTTGATAAAGCGATCAAAGAATCGACTTTATTTTTGGTTGTATTCTCAGAAAACTACGCGTCTTCAACATGGTGTTTGAATGAACTCGTTGAAATAATGGAGTGCAACAAAAATGAAGACAAAGTTGTTGTCATTCCTGTGTTCTACCGTATAGAACCTTCACATGTGCGAAAGCAGACAGGTAGTTATCACACCGCGTTGGCGAAACACAAGAAACAAGGCAAAGATAAGATTCAAAAGTGGAAGGATGCTCTCTTTGAAGCAGCTAATTTATCTGGTTTTGATTCTAGCACATACAGGACTGAAACTGAGTTGATAAAAGATATTATCAAAGATGTTTTACAAAAACTGAATTACAAGTACACAAGTGAATTTAGATGTCTTTTCATTCCTGATAACAACTATTTTCAGATTGAGTCTTTATTAAAAGTTGATACAAAACAAGTTCAAATTATTGGAATATGGGGTATGGGAGGCATTGGTAAGACAACTCTTGCTGCTGCCATTTTTCATAGGGTCTCCTCCCAATATGAAGGTAGTTGCTTCTTAGAAAATGTGACAGAAGAATCAGAAAGGCATGGACTTAACTATATATGCAATAGACTCTTTTCTAAGTTATTGAAGGAAGATGTTGGTCTTGACACACCATTAGTAGTACCTTCTATTGTTATGAGAAGACTCAGAAATATGAAAGCTTTTGTTGTAATAGATGGTGTGAACAGTTCAAAACTTCTAGAAAACTTGGTTGGAATCGGACGCGACTGGCTAGGACCTAGTAGTAGAGTCATTGTGACAACTAGAGATAAGCAGGTACTTATAAGTGGAAGAGTTGATACAATACATCAAGTCGAAGAAATGAACTTTCATAATTCGTTTCGACTATTTAGCTTGAATGCCTTCCATAAAACTTTTCCCGAAGAGTCATATATGGAGCTCTCAAAACGAGTAATTGGTTACGCCAAAGGCAATCCTTTAGCTCTGAAAGTTTTGGGATCATATCTTCGTTCCAAAAGTGAAATAGAATGGGACAGTGCACTCGATAAACTCAAAGAGGTTCCGAATGCAGAAATCCATGAGGTGTTGAGGTTGAGTTATGATAAATTGGACAATATAGACAAAAATATATTTCTAGACATTGCATGTTTTTTTAAAGGCTATGCAATAAACAAAGTGATACAAATATTAAATGCATGTGGTTTCTTTGCAGATAATGGAATAAAAAACCTTTTAAATAAGGCTCTTGTAACTATTGATTTAAATAATCGCATACAAATGCATGATTTGTTACAAGAAATGGGTAGGGAAATTGTTCGACAAGAACCTACCGAAACTCATGGATGTCATAGCAGATTGTGGGACCCTAAAGAAATCTATGATGTATTGACATCTAATAGTGGAACTGATGAAGTTGAAGTTATATGGTTAGATATGACTCAAATTCCACCTATAAATTTAAGTCCAAAAGCATTCAAAAAGATGTCAAAACTAAGGTTACTTGCTTTCCAAGGAAACAGAAGGGACTTTAACAACTCTGTCTATTCTTCTAAGATAATAAATTCAGTGTATCTTCCATCAGGTCTTAAATTTTTGCCTAAAAATTTGAGATATTTTGAGTGGTATGGATATCCATCAAAGTCTCTGCCACCAACTTTTTGTCCTGAGAAGCTTGTTGAGCTCTCCCTGCCATACAACAATGTGGAAAAACTTTGGGACGGAGTACAGAATCTACCAAGTTTGCAAAAGATTGACCTTCGTTGCTCCACAAGCCTGAAAGAGTGCCCGAATTTATCCCGTGCCCCAAATCTTAAATATGTAGGACTAAGCCACTGTAAAAGTTTGTCACATGTTGATCCATCAGTTTTATCTCTTGAGAAGCTTGAAGTTTTAAGTGTGAGTGGATGCACCTCACTTAAGAGCCTTTGTAGCAGCACTTGTTCACCCTTTCTCCGAGAAGTGTACGCTTCTCGTTGCTATAGTCTTCAAGAGTTCTCTGTCACATTAATGCCTCGTGAATGCAATCCCTCCGCAACTCCTTTATGTTTGAACTTAGGAGATTCAGGTTTGAATGAAGTGCCATCATCAATTTTGAGTATGAAAAGTCTTGGAAAGTTTTCTTTTCCCATCAGTAAGAGTCTCATGCATCTTCCTGAAAACTTTGCCGGCGAAATTACATTATCTGACTCAAGAAAACAAGAATGTGACACTTTCGTCACCTTAAACAAAGTACTTCCTAGCCCTGGATTTCGGAGTGTAACACGTTTATTTTTTGACTTCTGTCATAGCTTGTATGAAATTCCAGACAGTATCTCCTTTTTATCATCATTGGAGTATTTAAGACTATATGATTGTACCATCAAAAGCTTGCCTGAAAGTGTGAAGTATCTTCGACGACTTCAACATCTTGAAGTTGATGAATGTAAAATGCTTCAATCTATACCAGCACTTCCGCATTCCATTCAATGTTTCCATGCATGGAACTGCGAATCTCTTGAGATAGTGTTAAGTTCAAAGAGTGAACCATCCATGAAACAAGAGTGTACTTTTCTGTTTCCAAACTGTGTAAAGTTGAATGAAGATTCCTATGATGCTATTTTGGAAGACGCCATTTTCGGCATTCAACTTGGAGCAAAAAACTTGTCAACAGTGGTATTAGAAGACCACGACGATGATGGTAAAACAACATATGCATTTGAAACAGTAAGATCTGGTAAGATTTGCTACTTTTTACCAGCTAGATGTGACAGACTTATACAAAAGTTTGATTACTATTCTACAGAAGCTCTTTTCACAGTTGAACTTCCTCCTAATACGTTAGGTTTTGTTTTCTACTTAGTTCTTTCACAAGTCCAATCATGCAACATTGGAAATGGTGGAAGTTTTGGATGTGAATGCATGTTGGAAACTAGTTGGGATGAAATGATCGATATAACTAGTTATTTTGTAGCTGGAAGCATCTGGTTTAATTCTTATACTTCATTCGAAATGAAGTCGGATCATTTGTTCTTATGGTATGATGCACAATGTTGCAAGAATATAATGGAAGAAATTAGAGAAAGTAGAAAAGCCATTAATCACAGAAGAGCAAGATACAAGCCAAAGATTACATTTGAATTCTTTGCTCTAAACATGAATAATGAAGAAGCATTGATAAAAGATTGCGGATTACATTGGATATATACCTCAGAAGATCTAATGATAGAGGGAGGACGAGAGTGTAAATCCAAAAGAAAAGTTGAGGACTCTGAATCGGATGAGCAAGAAGAAACGGTTCCTCCGATGAAGAAATTAAAGCAACAAGTCTTTGAAACTTGTTCCAATTCTGAATTGGATCATGAAACAGAACGGTTGAGACTTTCACTTGAAGAACTCTTGCATATTGGATTTTGTGGAAACCTAATGTAA 3588 0.3645 MAFSFSAYASSQSLKKHDVFISFRGEDTRANFTSFLHDALTRSYVQTYIDYNIEKGEEVWEELDKAIKESTLFLVVFSENYASSTWCLNELVEIMECNKNEDKVVVIPVFYRIEPSHVRKQTGSYHTALAKHKKQGKDKIQKWKDALFEAANLSGFDSSTYRTETELIKDIIKDVLQKLNYKYTSEFRCLFIPDNNYFQIESLLKVDTKQVQIIGIWGMGGIGKTTLAAAIFHRVSSQYEGSCFLENVTEESERHGLNYICNRLFSKLLKEDVGLDTPLVVPSIVMRRLRNMKAFVVIDGVNSSKLLENLVGIGRDWLGPSSRVIVTTRDKQVLISGRVDTIHQVEEMNFHNSFRLFSLNAFHKTFPEESYMELSKRVIGYAKGNPLALKVLGSYLRSKSEIEWDSALDKLKEVPNAEIHEVLRLSYDKLDNIDKNIFLDIACFFKGYAINKVIQILNACGFFADNGIKNLLNKALVTIDLNNRIQMHDLLQEMGREIVRQEPTETHGCHSRLWDPKEIYDVLTSNSGTDEVEVIWLDMTQIPPINLSPKAFKKMSKLRLLAFQGNRRDFNNSVYSSKIINSVYLPSGLKFLPKNLRYFEWYGYPSKSLPPTFCPEKLVELSLPYNNVEKLWDGVQNLPSLQKIDLRCSTSLKECPNLSRAPNLKYVGLSHCKSLSHVDPSVLSLEKLEVLSVSGCTSLKSLCSSTCSPFLREVYASRCYSLQEFSVTLMPRECNPSATPLCLNLGDSGLNEVPSSILSMKSLGKFSFPISKSLMHLPENFAGEITLSDSRKQECDTFVTLNKVLPSPGFRSVTRLFFDFCHSLYEIPDSISFLSSLEYLRLYDCTIKSLPESVKYLRRLQHLEVDECKMLQSIPALPHSIQCFHAWNCESLEIVLSSKSEPSMKQECTFLFPNCVKLNEDSYDAILEDAIFGIQLGAKNLSTVVLEDHDDDGKTTYAFETVRSGKICYFLPARCDRLIQKFDYYSTEALFTVELPPNTLGFVFYLVLSQVQSCNIGNGGSFGCECMLETSWDEMIDITSYFVAGSIWFNSYTSFEMKSDHLFLWYDAQCCKNIMEEIRESRKAINHRRARYKPKITFEFFALNMNNEEALIKDCGLHWIYTSEDLMIEGGRECKSKRKVEDSESDEQEETVPPMKKLKQQVFETCSNSELDHETERLRLSLEELLHIGFCGNLM 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01463 1195 Gene3D - 348 431 IPR042197 -
Trre12g01463 1195 Pfam NB-ARC domain 201 431 IPR002182 GO:0043531
Trre12g01463 1195 SMART till_3 16 153 IPR000157 GO:0007165
Trre12g01463 1195 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 780 IPR044974 GO:0006952
Trre12g01463 1195 PRINTS Disease resistance protein signature 382 396 - -
Trre12g01463 1195 PRINTS Disease resistance protein signature 288 302 - -
Trre12g01463 1195 PRINTS Disease resistance protein signature 683 699 - -
Trre12g01463 1195 PRINTS Disease resistance protein signature 213 228 - -
Trre12g01463 1195 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 181 - -
Trre12g01463 1195 Pfam TIR domain 16 185 IPR000157 GO:0007165
Trre12g01463 1195 Gene3D Ribonuclease Inhibitor 515 735 IPR032675 -
Trre12g01463 1195 Gene3D Ribonuclease Inhibitor 741 919 IPR032675 -
Trre12g01463 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 441 IPR027417 -
Trre12g01463 1195 SUPERFAMILY L domain-like 533 902 - -
Trre12g01463 1195 Gene3D - 11 185 IPR035897 -
Trre12g01463 1195 SUPERFAMILY "Winged helix" DNA-binding domain 418 523 IPR036390 -
Trre12g01463 1195 Pfam Leucine Rich Repeat 617 636 IPR011713 -
Trre12g01463 1195 ProSiteProfiles TIR domain profile. 15 179 IPR000157 GO:0007165
Trre12g01463 1195 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 156 IPR035897 -
Trre12g01463 1195 Gene3D - 186 342 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01463 Trre-Chr12 14510237 14514982 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01463 8 863 WRKY Transcription Factor Family AT4G12020 30.760 9.91e-101 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01463 - - gmx:100805490 1315.06