Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01457 ATGGGGTGGGGTCACCTTCGAATTCATGGCTCCGATTCCGGTAACAACGCCGATGAAGGTCCCAGCACCAGCACGCCGGTACCACGTCAGTTTCCTCCGGCTGCTCAACCGGAAATGATGCGAGCAGCTGAAAAAGACGATCAATACGCGTCTTTCGTTTACGAAGCTTGTCGCGATGCCTTCCGCCACCTCTTCGGTACTAGAGTTGCGGTGGCTTATCAAAACGAGACGAAACTTTTAGGGCAAATGCTTTACTATGTTCTCACAACAGGCTCTGGACAACAAACACTTGGTGAAGAATATTGTGATATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACACCAGCAAGGCGAGCTTTGTTCATTGTATACCAGTCCGCGATTCCATACATTGCAGAACGAATTAGTTCTAGAATTGCTTCCCGAGGAATTCTCCTTGCTGACTATGAGTCTGCTGAGAGTTATTCTAGTGAAAATGCCCACGGGAGTAGTAGTTCTCGGGTTTATGCCACGAGTGAACTTTCTACTTTGTCTACCTCAGGGCAGTCTACTTCAACTCTGACTAGGTTGAAGGAGAAACTCGGTGGATTTTGGTTGCATATGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGTGAGTTATTGCAGTTGCTTCTACGTGCTAACCTCATGTTCTTTTACTTTGAAGGTCTCTATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATTGGAAAAGCGTCAAATCAAAGACCCAGATATCAAATACTGGGAGTATTTCTCTTGATTCAACTTTGTGTAATAGCTGCTGAAGCGCTGCGTCGAAGAAATTTTACATCAATTGCTAGTTCAGTTCATCAGGCATCCTTTGCAACCGACCATACATCAGCAGGACATGGTTTGCCTGTTCTAAATGAAGAAGGTAATTTGGCATCTCCAGAAGCTGACAATGGAAGTTGGGTCTCTGGATCTTCATCTTCTGAGCATCATGCATCTGGTGTTAGCAAATGCACACTTTGCCTGAGTAATCGTCAACACCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACTCCTATAGCACACTCGAGTCTAGTTTGTATTTATCATTCAGACTTCTAG 1194 0.4548 MGWGHLRIHGSDSGNNADEGPSTSTPVPRQFPPAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQSAIPYIAERISSRIASRGILLADYESAESYSSENAHGSSSSRVYATSELSTLSTSGQSTSTLTRLKEKLGGFWLHMVQRWPTMLPFVRELLQLLLRANLMFFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNFTSIASSVHQASFATDHTSAGHGLPVLNEEGNLASPEADNGSWVSGSSSSEHHASGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPIAHSSLVCIYHSDF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01457 397 SMART ring_2 343 380 IPR001841 -
Trre12g01457 397 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 32 395 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Trre12g01457 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 393 IPR013083 -
Trre12g01457 397 ProSitePatterns Zinc finger RING-type signature. 358 367 IPR017907 -
Trre12g01457 397 ProSiteProfiles Zinc finger RING-type profile. 343 381 IPR001841 -
Trre12g01457 397 Pfam Zinc finger, C3HC4 type (RING finger) 342 385 - -
Trre12g01457 397 FunFam Peroxisome biogenesis factor 10 319 394 - -
Trre12g01457 397 Pfam Pex2 / Pex12 amino terminal region 46 281 IPR006845 -
Trre12g01457 397 CDD RING-HC_PEX10 341 392 - -
Trre12g01457 397 MobiDBLite consensus disorder prediction 1 40 - -
Trre12g01457 397 SUPERFAMILY RING/U-box 342 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01457 Trre-Chr12 14436611 14442373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01457 337 393 C3H Transcription Factor Family AT4G28270 32.877 5.06e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01457 K13346 - gmx:100783914 649.432