Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre12g01428 | ATGCCTTCACTACCTATCACTAACGACGCCGTTTCAATGGAAAGCCCTAAGCAAAAATCAATTAAGAAGAAGAAGGAGAAGCTTCAAAACGACATCGTTATGGAGGAAGAATCAGCGAAGAAGAGTTCAAAGAAGAGGAAGAAAGGTTCAGATGATGATGAAGAAGTTAAGAGTGGAACTAGCTCTGATGAAGGTTCTAGAATGAAAGTGAAAAAGGAGAAAAAGAAGAAGAAATCGAAGGTTGATGATGATGAAGAAGTTGAAGAAGTTGTTGTGAAGAAGGATGATCCTAATGCGGTTTCGAATTTTAGAATTTCCGAACCGTTGAGGATGAAATTGAAGGAAAATGGAATTGAAGCTTTGTTTCCGATTCAAGCTATGACTTTTAATACTATTCTCGATGGTTCTGATTTGGTTGGTCGTGCTCGTACTGGTCAGGGTAAAACTCTGGCATTTGTGTTGCCCATATTAGAGTCATTGACAAATGGTCCAGCTAAATCGGTTAGAAAGACTGGTTATGGGAGGGTTCCAAGTGTCCTCGTGCTTTTACCTACTAGAGAATTGGCCAATCAGGTGTATGCTGACTTTGAACTTTATGGTTCGTCCTTGGGATTGGCTGCTTGCGCTGTATATGGAGGAGCTCCGTATGGACCTCAGGAGAATAAGCTCAGGAGAGGTGTTGATATTGTTATTGGAACACCAGGTCGTATTAAGGATCATATTGAGAAGGGAAATATTGACCTGAGCCACCTAAAGTTCCGTGTTCTTGATGAGGCTGATGAGATGTTGAGGATGGGTTTTGTTGACGATGTTGAACTCATTCTAGGTAAGGTACAAGATGTTACTAAAGTACAGACCCTTCTTTTCAGTGCTACTTTGCCAAGCTGGGTTAAACAAATTTCTACAAAATTTCTGAAAGCAGATAAGAAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATCATCCTTCCCTGTAATAATACTGCCATGGCACAACTTATCCCCGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTGCGGAGAAAAAAGAGTCTGCTTCTGAGCTTGCTGGATTGTTGCCTGGTGCAAGAGCTCTCCATGGTGATATACAGCAGTCACAACGTGAGGTTACATTGAAAGCTTTTAGGTCCGGGAAATTCATGACTTTGGTGGCCACCAATGTGGCGGCCAGAGGTCTAGACATTAATGATGTTCAGTTGATTATTCAGTGTGAGCCTCCCCGGGATGTAGAAGCATATATACATCGATCTGGGCGAACAGGAAGAGCTGGCAACACTGGAGTTGCTGTGATGCTTTATGATCCCAGAAGGTCAAATGTAGCTAAAATAGAAAGAGAAGCAGGTATAAAATTTGAACGTGTATCTGCTCCTCAGCCTGATGAAATCGCCAAAGCTATGGGTGGGGATGCTGCTGAAATGATTACTGATGTATCTGATAGTGTAATTCCTGCATTCAAATCTGCAGCTGAGGAACTTTTGAAAAACTCTGGTTTATCAGCTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGATGTAAAGAAAAGATCACTATTGACTTCAATGGAGAATTATGTTACCTTACTTCTTGAGGGAGGAAAACCTATGTTCACCCCATCCTTTGCATTTGGAACCCTGAGGAGATTCGTACCTGAGGATAAGGTTGACGCAGTACAAGGTCTTGCTCTAACTGCAGATGGACAGGGTGCTGTGTTTGATGTACCAGCCAAGGACTTGGACGTATTTCTTAACAGTCAAAAGAATGCTGTTAATGTAAGCCTAAAGATTGTTAAAGAATTGCCAAGTTTACAACAAAGAGAGGACAATAGACCAAGCAGATACGGTGGTGGCCGTGGGTTTTCAGGTGGAAGAAGCGGAGGAGGGTATAGGTTTGGCGGAAGAGGTGGTGGCGGTGGTGGAAGAGGTTATGGAGGAGGCAGAGGAGGTGGAAAGAGATGGTAA | 2031 | 0.4264 | MPSLPITNDAVSMESPKQKSIKKKKEKLQNDIVMEEESAKKSSKKRKKGSDDDEEVKSGTSSDEGSRMKVKKEKKKKKSKVDDDEEVEEVVVKKDDPNAVSNFRISEPLRMKLKENGIEALFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKTGYGRVPSVLVLLPTRELANQVYADFELYGSSLGLAACAVYGGAPYGPQENKLRRGVDIVIGTPGRIKDHIEKGNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVKQISTKFLKADKKTADLVGNEKMKASTNVRHIILPCNNTAMAQLIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREVTLKAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNVAKIEREAGIKFERVSAPQPDEIAKAMGGDAAEMITDVSDSVIPAFKSAAEELLKNSGLSAVELLAKALAKAVGYTDVKKRSLLTSMENYVTLLLEGGKPMFTPSFAFGTLRRFVPEDKVDAVQGLALTADGQGAVFDVPAKDLDVFLNSQKNAVNVSLKIVKELPSLQQREDNRPSRYGGGRGFSGGRSGGGYRFGGRGGGGGGRGYGGGRGGGKRW | 676 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre12g01428 | 676 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 255 | 263 | IPR000629 | - | |
Trre12g01428 | 676 | Pfam | Helicase conserved C-terminal domain | 345 | 443 | IPR001650 | - | |
Trre12g01428 | 676 | Pfam | DEAD/DEAH box helicase | 122 | 299 | IPR011545 | GO:0003676|GO:0005524 | |
Trre12g01428 | 676 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Trre12g01428 | 676 | CDD | SF2_C_DEAD | 326 | 452 | - | - | |
Trre12g01428 | 676 | Gene3D | - | 321 | 548 | IPR027417 | - | |
Trre12g01428 | 676 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 44 | 515 | - | - | |
Trre12g01428 | 676 | SMART | ultradead3 | 117 | 329 | IPR014001 | - | |
Trre12g01428 | 676 | CDD | GUCT_RH7_like | 539 | 624 | - | - | |
Trre12g01428 | 676 | Gene3D | - | 42 | 311 | IPR027417 | - | |
Trre12g01428 | 676 | FunFam | DEAD-box ATP-dependent RNA helicase 7 | 549 | 621 | - | - | |
Trre12g01428 | 676 | SUPERFAMILY | RNA-binding domain, RBD | 537 | 617 | IPR035979 | GO:0003676 | |
Trre12g01428 | 676 | Pfam | GUCT (NUC152) domain | 532 | 627 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
Trre12g01428 | 676 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 129 | 311 | IPR014001 | - | |
Trre12g01428 | 676 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 178 | 455 | IPR027417 | - | |
Trre12g01428 | 676 | Coils | Coil | 18 | 45 | - | - | |
Trre12g01428 | 676 | MobiDBLite | consensus disorder prediction | 16 | 70 | - | - | |
Trre12g01428 | 676 | MobiDBLite | consensus disorder prediction | 627 | 676 | - | - | |
Trre12g01428 | 676 | SMART | helicmild6 | 366 | 443 | IPR001650 | - | |
Trre12g01428 | 676 | CDD | DEADc | 109 | 306 | - | - | |
Trre12g01428 | 676 | MobiDBLite | consensus disorder prediction | 1 | 89 | - | - | |
Trre12g01428 | 676 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 340 | 481 | IPR001650 | - | |
Trre12g01428 | 676 | Gene3D | - | 549 | 622 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre12g01428 | Trre-Chr12 | 14193572 | 14197956 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre12g01428 | 81 | 481 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.691 | 2.10e-42 | 157 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre12g01428 | K16911 | - | jre:108998595 | 879.011 |