Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01428 ATGCCTTCACTACCTATCACTAACGACGCCGTTTCAATGGAAAGCCCTAAGCAAAAATCAATTAAGAAGAAGAAGGAGAAGCTTCAAAACGACATCGTTATGGAGGAAGAATCAGCGAAGAAGAGTTCAAAGAAGAGGAAGAAAGGTTCAGATGATGATGAAGAAGTTAAGAGTGGAACTAGCTCTGATGAAGGTTCTAGAATGAAAGTGAAAAAGGAGAAAAAGAAGAAGAAATCGAAGGTTGATGATGATGAAGAAGTTGAAGAAGTTGTTGTGAAGAAGGATGATCCTAATGCGGTTTCGAATTTTAGAATTTCCGAACCGTTGAGGATGAAATTGAAGGAAAATGGAATTGAAGCTTTGTTTCCGATTCAAGCTATGACTTTTAATACTATTCTCGATGGTTCTGATTTGGTTGGTCGTGCTCGTACTGGTCAGGGTAAAACTCTGGCATTTGTGTTGCCCATATTAGAGTCATTGACAAATGGTCCAGCTAAATCGGTTAGAAAGACTGGTTATGGGAGGGTTCCAAGTGTCCTCGTGCTTTTACCTACTAGAGAATTGGCCAATCAGGTGTATGCTGACTTTGAACTTTATGGTTCGTCCTTGGGATTGGCTGCTTGCGCTGTATATGGAGGAGCTCCGTATGGACCTCAGGAGAATAAGCTCAGGAGAGGTGTTGATATTGTTATTGGAACACCAGGTCGTATTAAGGATCATATTGAGAAGGGAAATATTGACCTGAGCCACCTAAAGTTCCGTGTTCTTGATGAGGCTGATGAGATGTTGAGGATGGGTTTTGTTGACGATGTTGAACTCATTCTAGGTAAGGTACAAGATGTTACTAAAGTACAGACCCTTCTTTTCAGTGCTACTTTGCCAAGCTGGGTTAAACAAATTTCTACAAAATTTCTGAAAGCAGATAAGAAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATCATCCTTCCCTGTAATAATACTGCCATGGCACAACTTATCCCCGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTGCGGAGAAAAAAGAGTCTGCTTCTGAGCTTGCTGGATTGTTGCCTGGTGCAAGAGCTCTCCATGGTGATATACAGCAGTCACAACGTGAGGTTACATTGAAAGCTTTTAGGTCCGGGAAATTCATGACTTTGGTGGCCACCAATGTGGCGGCCAGAGGTCTAGACATTAATGATGTTCAGTTGATTATTCAGTGTGAGCCTCCCCGGGATGTAGAAGCATATATACATCGATCTGGGCGAACAGGAAGAGCTGGCAACACTGGAGTTGCTGTGATGCTTTATGATCCCAGAAGGTCAAATGTAGCTAAAATAGAAAGAGAAGCAGGTATAAAATTTGAACGTGTATCTGCTCCTCAGCCTGATGAAATCGCCAAAGCTATGGGTGGGGATGCTGCTGAAATGATTACTGATGTATCTGATAGTGTAATTCCTGCATTCAAATCTGCAGCTGAGGAACTTTTGAAAAACTCTGGTTTATCAGCTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGATGTAAAGAAAAGATCACTATTGACTTCAATGGAGAATTATGTTACCTTACTTCTTGAGGGAGGAAAACCTATGTTCACCCCATCCTTTGCATTTGGAACCCTGAGGAGATTCGTACCTGAGGATAAGGTTGACGCAGTACAAGGTCTTGCTCTAACTGCAGATGGACAGGGTGCTGTGTTTGATGTACCAGCCAAGGACTTGGACGTATTTCTTAACAGTCAAAAGAATGCTGTTAATGTAAGCCTAAAGATTGTTAAAGAATTGCCAAGTTTACAACAAAGAGAGGACAATAGACCAAGCAGATACGGTGGTGGCCGTGGGTTTTCAGGTGGAAGAAGCGGAGGAGGGTATAGGTTTGGCGGAAGAGGTGGTGGCGGTGGTGGAAGAGGTTATGGAGGAGGCAGAGGAGGTGGAAAGAGATGGTAA 2031 0.4264 MPSLPITNDAVSMESPKQKSIKKKKEKLQNDIVMEEESAKKSSKKRKKGSDDDEEVKSGTSSDEGSRMKVKKEKKKKKSKVDDDEEVEEVVVKKDDPNAVSNFRISEPLRMKLKENGIEALFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKTGYGRVPSVLVLLPTRELANQVYADFELYGSSLGLAACAVYGGAPYGPQENKLRRGVDIVIGTPGRIKDHIEKGNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVKQISTKFLKADKKTADLVGNEKMKASTNVRHIILPCNNTAMAQLIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREVTLKAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNVAKIEREAGIKFERVSAPQPDEIAKAMGGDAAEMITDVSDSVIPAFKSAAEELLKNSGLSAVELLAKALAKAVGYTDVKKRSLLTSMENYVTLLLEGGKPMFTPSFAFGTLRRFVPEDKVDAVQGLALTADGQGAVFDVPAKDLDVFLNSQKNAVNVSLKIVKELPSLQQREDNRPSRYGGGRGFSGGRSGGGYRFGGRGGGGGGRGYGGGRGGGKRW 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01428 676 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 255 263 IPR000629 -
Trre12g01428 676 Pfam Helicase conserved C-terminal domain 345 443 IPR001650 -
Trre12g01428 676 Pfam DEAD/DEAH box helicase 122 299 IPR011545 GO:0003676|GO:0005524
Trre12g01428 676 MobiDBLite consensus disorder prediction 1 15 - -
Trre12g01428 676 CDD SF2_C_DEAD 326 452 - -
Trre12g01428 676 Gene3D - 321 548 IPR027417 -
Trre12g01428 676 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 44 515 - -
Trre12g01428 676 SMART ultradead3 117 329 IPR014001 -
Trre12g01428 676 CDD GUCT_RH7_like 539 624 - -
Trre12g01428 676 Gene3D - 42 311 IPR027417 -
Trre12g01428 676 FunFam DEAD-box ATP-dependent RNA helicase 7 549 621 - -
Trre12g01428 676 SUPERFAMILY RNA-binding domain, RBD 537 617 IPR035979 GO:0003676
Trre12g01428 676 Pfam GUCT (NUC152) domain 532 627 IPR012562 GO:0003723|GO:0004386|GO:0005524
Trre12g01428 676 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 311 IPR014001 -
Trre12g01428 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 455 IPR027417 -
Trre12g01428 676 Coils Coil 18 45 - -
Trre12g01428 676 MobiDBLite consensus disorder prediction 16 70 - -
Trre12g01428 676 MobiDBLite consensus disorder prediction 627 676 - -
Trre12g01428 676 SMART helicmild6 366 443 IPR001650 -
Trre12g01428 676 CDD DEADc 109 306 - -
Trre12g01428 676 MobiDBLite consensus disorder prediction 1 89 - -
Trre12g01428 676 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 340 481 IPR001650 -
Trre12g01428 676 Gene3D - 549 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01428 Trre-Chr12 14193572 14197956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01428 81 481 Eukaryotic Initiation Factors Gene Family AT3G19760 29.691 2.10e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01428 K16911 - jre:108998595 879.011