Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01420 ATGAGAAGAAGATTTGTTGTTGTATCAGATTTTGCACTATCATTCATGTGGGTATGTTCTGGTGTTCTTCTAAAGTCATTTGTAAAAAAAAATATGAGCTTTAATCATTCTCATGTAGCTGAGATTGTCAAGATTGGTTTTTCCATAGCCAACATGTTTTTCTATGCTTTTATTGCTAAAATATTTCATGGTGGGACTAATAATCCTCTTGCTACTTTGGTTGATGCTATCTCCGGAGATTTTCATAATTTCTTCTTTTGCATTGCTTCAAGAATTCCTGCTCAGGTGATTGGATATATTGTTGGAGTGAAACTTCTTATGAATACAATTCCTGAAGTAGGACATGGACCACGTTTGAATGTTGACATCTATCGAGGAGCATTGACCGAAGGAATACTAACATTTGCAATTGTAGTCATTACACTTGGAATTGCTGCAACAAAAATTCGTGGAAGTTTCTTCTTGAAGACATGGATTTCTAGTATCATCAAGTTAACACTTCATAAACTTGGTTCTGATTTGACTGGTGGTTGTATGAACCCTGCATCCGTAATGGGATGGGCTTTTGCTCGAGGGGATCACATATCAAAGGAGCACCTCTTTGTATATTGGCTTGCCCCTATAGAGGCTACTCTTTTAGCAGTTGGGATGTTCAAATTGCTATTACGACATGTAAAAAAAGATAAAATGTGCTCAAAAAATAAATCAGATTGA 714 0.3599 MRRRFVVVSDFALSFMWVCSGVLLKSFVKKNMSFNHSHVAEIVKIGFSIANMFFYAFIAKIFHGGTNNPLATLVDAISGDFHNFFFCIASRIPAQVIGYIVGVKLLMNTIPEVGHGPRLNVDIYRGALTEGILTFAIVVITLGIAATKIRGSFFLKTWISSIIKLTLHKLGSDLTGGCMNPASVMGWAFARGDHISKEHLFVYWLAPIEATLLAVGMFKLLLRHVKKDKMCSKNKSD 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01420 237 PRINTS Major intrinsic protein family signature 129 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01420 237 PRINTS Major intrinsic protein family signature 201 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01420 237 PRINTS Major intrinsic protein family signature 87 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01420 237 PRINTS Major intrinsic protein family signature 161 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01420 237 PANTHER AQUAPORIN SIP2-1-RELATED 3 237 IPR044226 GO:0015267
Trre12g01420 237 SUPERFAMILY Aquaporin-like 7 229 IPR023271 -
Trre12g01420 237 Pfam Major intrinsic protein 7 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01420 237 Gene3D Glycerol uptake facilitator protein. 6 235 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01420 Trre-Chr12 14152571 14154244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01420 1 237 Major Intrinsic Protein MIP AT3G56950 52.521 7.28e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01420 K09875 - gmx:100786138 323.168