Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01419 ATGTCCCAGCTTACTTTAGGAAGGAAACATATGAGAAAAGGTCTGAAGCAAGCATGTGGAAGATGTGGTGTACCAGACCACAACAAATCTAGTTGCAAGTTACCTCCACCACCTACTCCAACTCCACCACCTGCTACAACTGAACCACCTGGTTCTACTCCAACTCCACCACCACCTACTGCTGCTAATCCAACTCCACCACCACCTACTGCTGCTATTACTCAACATCAACCACTTGCTATTGTTACAAGGAGGTATGAACTATATCCTTTTTATAGGACAAGTAATGTTTCATCAACAAATGAGCTTGTGCCTGAAACAAATGATTCAAAACTAGATTCAAGATTTTCAGAAGATCCATTTTATCTTTCCTATAATTGCTCAAATAAGAATACTAGCTCTTACAATATATACTTGAAGTTACTTCTCTCTTATTTATCTTCGAATGCCACGAGCGGAAAAAGATTTTATAAAGTTGAAGTAGAGGAAATGTTGTATGGCCTATACATGTGTCGAGGTGACCTTCCATCTCGCCTATGTGGTCAATGCGTCAAAAATGCAACAGATCAAATATACTCAAAGTGTCGTTCAAAACAAGAGGGTATAATTTGGTATAGCCACTGCTGGCTTCGGTATTCTTATCGGTATTTCTTCTCTAAAATTGAAACAAGTCCTATATATAGAGATGTAAATATCTCAAGATCCATCCCAATGCAAAACATATTCGCTGTTAAATTGTCAAATCATTTAGATCAACTTGCGACAGAAGCAGGGAGCAGCATTGACAGGTATACGATGAAATCGTTAAAATTGAATGATGTACAAACCTTGTATACTCTTGAACAATGTACGCAGGATTTGTCAAGTGACGATTGCACTTCATGTCTAAACGATGTGATAAGTGCCGCAATTCCATGGTCAGTTTTGGGAAGTATTGGGGGAAGAATTCTATATCCTAGTTGTAATCTGAGGTTTGAATTGTTTCAATTTTACGTGGAGGAGGGCGAAGCTCAGGTACCTGGGAGTCCTACTCCGTTATTGGGAGATGCAGAGAAGGGGAAGTTGGGAAGAATTATCGGAATTGTTGTCGCTACCATTATTTTAGTAATGCTCTTTTCTACTGGCTATTATTTGCTAAAGAGAAGGCAAAGAAAGAGCCGTAGGACTATTCTTCGAGAAAATTTTGGTGAAGAAAGTATCGCTTTAGAACCACTGCAGTTCGATTGGGCAGTAATTGAAGCAGCAACCAACAACTTTTCTAATGACAATTACATTGGAAAAGGCGGGTTTGGAGAGGTCTACAAGGGTATGCTTTTTGATGGACGAGAAGTGGCTGTAAAGAGACTTTCAAGAAGTTCCATGCAAGGTGCAGAGGAGTTCAAGAATGAAGTTTTATTGATAGCCAAGCTTCAACATAGAAATCTAGTGACATTTATTGGTTTCTGCCTTGAAGAACATGAGAAAATACTTATTTATGAATTTGTTCCCAACAAAAGTCTTGATTACTTTTTATTTGATTCTCGGCGGCAAAAGTTGTTAACTTGGGTTGAACGATTTAATATTATAGGAGGAATTGCTCGAGGAATTCTTTATTTGCATGAACATTCTCGACTTAAAGTTATACATCGTGATCTCAAACCTAGTAATATTCTATTAGATGAAAATATGATCCCTAAAATATCCGATTTTGGTTTGGCTCGAATTGTCGAAATAAGTCAAGATGAAGGAAGTACAAATAGAATTGTGGGAACATATGGTTATATGTCTCCGGAATATATAATGTTTGGACAATTTTCTGAAAAATCCGACATTTATAGTTTTGGAGTCATGGTTTTAGAGATTGTTGCCGGAAAGAAGAATATAAGTTCACATACACCTCACCATGTAGCTGATAGCCTCTTGAGTTATGTTTGGAGACAATGGAAGGATCAAACTCCTTTAAGTATATTGGACCCAGATATTAAAGAAGATTATTCAAACATTGAAGTCATTAAGTGCATTCAAATTGGTCTATTATGTGTTCAAAATGACTCAGAAGCTAGACCATCAATGGTGACAGTTGCTTCTTATCTTAGCAGTAATTCAATTGAATTACCAATTCCACAAGAACCTGCTTTTTTGTTGCATGGTAGAACATATTCAAGCTCTACTCAATCTGCCAATAGTTCTGCACTATTGTCTATCAATGAAATGACTACAAGTACTTTTCTTCCACGATAG 2220 0.373 MSQLTLGRKHMRKGLKQACGRCGVPDHNKSSCKLPPPPTPTPPPATTEPPGSTPTPPPPTAANPTPPPPTAAITQHQPLAIVTRRYELYPFYRTSNVSSTNELVPETNDSKLDSRFSEDPFYLSYNCSNKNTSSYNIYLKLLLSYLSSNATSGKRFYKVEVEEMLYGLYMCRGDLPSRLCGQCVKNATDQIYSKCRSKQEGIIWYSHCWLRYSYRYFFSKIETSPIYRDVNISRSIPMQNIFAVKLSNHLDQLATEAGSSIDRYTMKSLKLNDVQTLYTLEQCTQDLSSDDCTSCLNDVISAAIPWSVLGSIGGRILYPSCNLRFELFQFYVEEGEAQVPGSPTPLLGDAEKGKLGRIIGIVVATIILVMLFSTGYYLLKRRQRKSRRTILRENFGEESIALEPLQFDWAVIEAATNNFSNDNYIGKGGFGEVYKGMLFDGREVAVKRLSRSSMQGAEEFKNEVLLIAKLQHRNLVTFIGFCLEEHEKILIYEFVPNKSLDYFLFDSRRQKLLTWVERFNIIGGIARGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVEISQDEGSTNRIVGTYGYMSPEYIMFGQFSEKSDIYSFGVMVLEIVAGKKNISSHTPHHVADSLLSYVWRQWKDQTPLSILDPDIKEDYSNIEVIKCIQIGLLCVQNDSEARPSMVTVASYLSSNSIELPIPQEPAFLLHGRTYSSSTQSANSSALLSINEMTTSTFLPR 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01419 739 ProSiteProfiles Gnk2-homologous domain profile. 223 330 IPR002902 -
Trre12g01419 739 ProSiteProfiles Protein kinase domain profile. 419 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01419 739 MobiDBLite consensus disorder prediction 31 72 - -
Trre12g01419 739 FunFam Cysteine-rich receptor-like protein kinase 25 225 330 - -
Trre12g01419 739 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 133 732 - -
Trre12g01419 739 SUPERFAMILY Protein kinase-like (PK-like) 403 720 IPR011009 -
Trre12g01419 739 Gene3D - 226 330 IPR038408 -
Trre12g01419 739 Gene3D - 121 217 IPR038408 -
Trre12g01419 739 Gene3D Phosphorylase Kinase; domain 1 380 494 - -
Trre12g01419 739 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 380 494 - -
Trre12g01419 739 Pfam Salt stress response/antifungal 127 213 IPR002902 -
Trre12g01419 739 Pfam Salt stress response/antifungal 241 326 IPR002902 -
Trre12g01419 739 SMART serkin_6 419 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01419 739 FunFam cysteine-rich receptor-like protein kinase 10 495 698 - -
Trre12g01419 739 ProSiteProfiles Gnk2-homologous domain profile. 117 217 IPR002902 -
Trre12g01419 739 Gene3D Transferase(Phosphotransferase) domain 1 495 698 - -
Trre12g01419 739 MobiDBLite consensus disorder prediction 1 72 - -
Trre12g01419 739 Coils Coil 739 739 - -
Trre12g01419 739 Pfam Protein kinase domain 421 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01419 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Trre12g01419 739 ProSitePatterns Protein kinases ATP-binding region signature. 425 447 IPR017441 GO:0005524
Trre12g01419 739 CDD STKc_IRAK 425 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01419 Trre-Chr12 14130191 14136453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01419 117 739 Receptor kinase-like Gene Family AT4G05200 43.722 1.25e-174 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g01419 Pkinase 9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01419 - - cam:101493835 874.774