Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01416 ATGGCTTACTCTAAAATTATCTTTCTCTCTATCCTTGTTAGATTCCTCACTTTTGCAACTACCATGGCACAAGACTCTTCATTTTTTCTAAACAAAGTTTGTTCCCCTGACATCACCACAGCCAACAGCAACTTCCATGTCAATCTCATGACACTTCTCTCTTCATTGTCATCAAAAGCCATAAGCAACACTGAATTCTACAACCCGCCTATTATTGGTACAAATCCCTCAGATTCTATCTATGGATTGTTCATGTGTAGGGGTGATGTGGACTCTCAACTTTGTCATGAATGCATAGGCAATGCAACTCAACATCTATCCTCAGAGTGTTCTTTGTCCATACACGCTTCGATTTGGTACAACGAGTGCACGGTTCAATACTCTAACAATTCTTTAATTTCCGTAGTTGATAAGATGTTCGGTTTTCCCATGTGCAATACCGCGAATTTCTCAAACACAAGCCTTGTGCCTTTAATGTTTTCAACGATGAATCTAACGGCAGATGAAGCAGCTAGTGAGAAGAAGAAGAAGTTTGCAACAAATGAACGAGTTTTCGAAGATCAAACCCTTTATTGTCTAGCTCAGTGCACTTCACACTTATCGCCGAATGATTGTAGAACCTGTCTGGGTAGTTCTATCCAAGAACTTCGAATTTATTGTGATGGAAAACTAGGTGGGAGATTTCTTTACCCTAGTTGTAATGTTAGGTATGAACTATATCCTTTTTATAGGTCTACTAATGTTCTTTCACCAAATGAGCTTGCTCCTCAAACAAATGATTTGATTTCGAAACAAGAATCAAGATTTCCGGAAGATCCATTATATCTTTCCCATAATTGCTCAAATAAATACAATACAATCACTTCGAAAAATTTCAACTTACTTCTCTCTTATCTGTTGTCCAACGCCACCAGCGGAAAACTATATGATAAAGTTATAATGGACGGAATTGTGTATGGTCTCTTCATGTGTCGGGGGGACCTCTCTTCACACCTTTGTGCTCAATGCATAAAAAACGCAAAAGATCGAATATACTCCATGTGTCTTTCATCCTCAGAGGGTATAATTTATTATAGTCAATGCTTGCTTCGCTATTCCGATCAATATTTTTTCTCTAACATCGCCGAAACAAGTCCTATGTACCGCGATATAAACATCACCAAACATTTCATCCCTGACCAAAACTTGTTCACTAGTACATTATCGAATCAGTTATCTGAACTTGCGAATGCTACGGGGAATAGTGAACACAAATATAAGACAAACTCATTAAAATTGAATGATGTACAAACCCTATACACTCTTGAACAATGTACAGAAATATTGAATAGCCAGGAATGCATTTCTTGTCTAAATGATATGATAAGTACACAAATTCCGTGGTCATCTTTGGGAAGTGTTGGGGGAAGAATTCTATATCCTAACTGCAATCTGAGATTTGAATTGTTCCAATTTTACTTGGAGAGCGACGATCGGTCGTCTAGAAATCCTTCAAAAGAAGCAGAAAAGCGGAAAATTATCTTAATTGTGGTCTCTACAATTACTTTGGCGATGCTCCTTTCTATTGGATACTATTTGCTAAAGGGAAGGGGAAGAAAGAATCGTAGGACTATTCTTCGAGATAACTTTGGTAAGGAAAGTGTCATTTTAGAACCACTTCAATTCGATTGGGCACTAATTGAAGCAGCAACCAACAACTTTTCTAAAGACAATTATATTGGCGAAGGCGGGTTTGGAGAAGTTTACAAGGGTATCCTTTTGGATGGACAAGAAGTTGCTATGAAGAGGCTTTCAAGAGGTTCTAAACAAGGTGTAGAGGAGTTCAAAAATGAAGTTTTATTGATAGCAAAGCTTCAACATAGAAATCTAGTGACATTTATTGGTTTTTGCCTTGAAGGACATGAGAATATACTTATTTATGAATTTGTGCCCAATAAGAGTCTTGATTACTTTTTATTTGATTGTCATCACCAAAAGTTGTTAACTTGGGTTGAACGCTTTAACATCATAGGAGGAATTGTTCGAGGAATTCTTTATTTGCATGAACATTCTCGACTCAAAGTTATACATCGCGATCTTAAACCTAGTAATATTCTTTTAGATGAAAATATGATTCCTAAAATTTCCGATTTTGGTTTGGCTCGAATTATGGAAATAAGTCAAGACGAAGGAAGTACAAACAGAATCGTTGGAACATATGGTTATATGGCTCCGGAATATGCTATGCTGGGACAATTTTCTGAAAAGTCGGACGTTTATAGTTTTGGAGTCATGTTGTTGGAGATTGTAGCAGGAAAAAAGAATATAAGCTCATATGCACAACGCCATGTTGCTGATAACCTTTTGAATTATGTTTGGAGACAATGGAATGATGAAACACCTTTAAGTATATTGGACCCAAAAATTAAAGAAGATTATTCAGAAAAAGAATTCATAAAATGCATTCAGATTGGTCTATTATGTGTTCAACGTGACCCAGATGCTAGACCTTCAATGGTGACAATTGCTTCTTATCTTAGTAGTTATTCAATTGAATTACCAACACCACAAGAACCTGCATTTTTCTTGCATGATAGAACTTTTTCAAATGTTGCTGCACAAGGATCAAGTTCTACTCAATTTGTTAATAGTTCTTCATTGTTGTCTATCAATCAAATGTCTACTACAAATACTTTTAGTCCTCGATAG 2688 0.3642 MAYSKIIFLSILVRFLTFATTMAQDSSFFLNKVCSPDITTANSNFHVNLMTLLSSLSSKAISNTEFYNPPIIGTNPSDSIYGLFMCRGDVDSQLCHECIGNATQHLSSECSLSIHASIWYNECTVQYSNNSLISVVDKMFGFPMCNTANFSNTSLVPLMFSTMNLTADEAASEKKKKFATNERVFEDQTLYCLAQCTSHLSPNDCRTCLGSSIQELRIYCDGKLGGRFLYPSCNVRYELYPFYRSTNVLSPNELAPQTNDLISKQESRFPEDPLYLSHNCSNKYNTITSKNFNLLLSYLLSNATSGKLYDKVIMDGIVYGLFMCRGDLSSHLCAQCIKNAKDRIYSMCLSSSEGIIYYSQCLLRYSDQYFFSNIAETSPMYRDINITKHFIPDQNLFTSTLSNQLSELANATGNSEHKYKTNSLKLNDVQTLYTLEQCTEILNSQECISCLNDMISTQIPWSSLGSVGGRILYPNCNLRFELFQFYLESDDRSSRNPSKEAEKRKIILIVVSTITLAMLLSIGYYLLKGRGRKNRRTILRDNFGKESVILEPLQFDWALIEAATNNFSKDNYIGEGGFGEVYKGILLDGQEVAMKRLSRGSKQGVEEFKNEVLLIAKLQHRNLVTFIGFCLEGHENILIYEFVPNKSLDYFLFDCHHQKLLTWVERFNIIGGIVRGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIMEISQDEGSTNRIVGTYGYMAPEYAMLGQFSEKSDVYSFGVMLLEIVAGKKNISSYAQRHVADNLLNYVWRQWNDETPLSILDPKIKEDYSEKEFIKCIQIGLLCVQRDPDARPSMVTIASYLSSYSIELPTPQEPAFFLHDRTFSNVAAQGSSSTQFVNSSSLLSINQMSTTNTFSPR 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01416 895 ProSiteProfiles Protein kinase domain profile. 567 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01416 895 Gene3D - 380 485 IPR038408 -
Trre12g01416 895 Gene3D - 26 131 IPR038408 -
Trre12g01416 895 Gene3D - 274 370 IPR038408 -
Trre12g01416 895 Gene3D - 138 242 IPR038408 -
Trre12g01416 895 Gene3D Transferase(Phosphotransferase) domain 1 643 848 - -
Trre12g01416 895 ProSiteProfiles Gnk2-homologous domain profile. 377 485 IPR002902 -
Trre12g01416 895 ProSitePatterns Protein kinases ATP-binding region signature. 573 595 IPR017441 GO:0005524
Trre12g01416 895 Pfam Protein kinase domain 568 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01416 895 ProSiteProfiles Gnk2-homologous domain profile. 270 370 IPR002902 -
Trre12g01416 895 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 329 889 - -
Trre12g01416 895 Gene3D Phosphorylase Kinase; domain 1 532 642 - -
Trre12g01416 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672|GO:0006468
Trre12g01416 895 SUPERFAMILY Protein kinase-like (PK-like) 550 875 IPR011009 -
Trre12g01416 895 FunFam Cysteine-rich receptor-like protein kinase 25 379 485 - -
Trre12g01416 895 Pfam Salt stress response/antifungal 163 240 IPR002902 -
Trre12g01416 895 Pfam Salt stress response/antifungal 287 367 IPR002902 -
Trre12g01416 895 Pfam Salt stress response/antifungal 39 129 IPR002902 -
Trre12g01416 895 Pfam Salt stress response/antifungal 393 481 IPR002902 -
Trre12g01416 895 FunFam Cysteine-rich receptor-like protein kinase 25 140 242 - -
Trre12g01416 895 SMART serkin_6 567 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01416 895 CDD STKc_IRAK 573 839 - -
Trre12g01416 895 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Trre12g01416 895 ProSiteProfiles Gnk2-homologous domain profile. 138 242 IPR002902 -
Trre12g01416 895 FunFam cysteine-rich receptor-like protein kinase 10 643 846 - -
Trre12g01416 895 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 528 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01416 Trre-Chr12 14101649 14106289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01416 272 895 Receptor kinase-like Gene Family AT4G05200 41.921 1.95e-166 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g01416 Pkinase 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01416 - - gmx:100806048 1031.55