Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01403 ATGCTTCCCCGTAAACTCTTTCAATCTCAGCCGTCCACTTCATCATCCTCACCACAACCACGTCACCACCACCACATCCTAATTCCTCTACTCGCCGGAACCGCCGTCGTACTAACTCTTCTCCTCTTCTTCACTTTTCTCTGCCGCCGCACCCGAAAAAAACGCACATCCCCATTCTCCATCACCGACGACAATCCACCCCACCGTTACTCCTACTCCCTCCTCCGCCGCGCCACAAGCTCGTTCTCAAACCCACTCGGCCACGGTGGCTTCGGCACCGTCTTCTCCGGCATACTTTCTTCAAAACCAATCGCTGTTAAGCTCATGGATACTTCCTCTCACCAAGGTGAACGCGAATTTCACAACGAACTCTTCTTCGCTTCAAAGCTTCGTTCTCTTTATATAATTCCTCCGTTAGGGTTTTCATCTGATCCTAAACGGCGTCGTTTTCTACTTGTTTACCCTTTAATGCAAAACGGTAATCTTCAAGATGCACTTTTGAAGCGTAAGTGTTCTGAACTTTTTAATTGGGAAAAAAGATTTGAAATTTTGTTGGATATTGCTAAAGGACTTTGTTATCTTCACTCTTTTGATCCTCCTGTTATACATGGTGATATAAAACCTAGTAATATTCTTTTAGATTGTGATTTTAATGCTAAAATCGGCGATTTTGGACTTGCTCGGTTGAAATCGGAGCCGGTTAGGGTTGATGTTGAGCTTTTAGGTATTGAAAGTGATGATGATATGAAGAAAAGGAATGAAAATGATGATTTGGAGTGTGGTGGTGTTCGAGTTGTGATTGATGATTGTGGATCAATGGAGAGTGTGCATACTGGTTTTTTTGAAGAGGGTGGTAATTTGGGTGTGGAGCAATCTTCGGTGGCTTCGCCGGAAACTGTTGAGATGAGAATGACTATGACAACGGCATTGGCGGTGTCGCCGGGTTTTGATAAGGGGAGTGTGAAGAGTGAGAAGGATGTTGTTGGTGTTGAGGATGGTAAGAGGAATGGGAAAGGGTTGACGAGTAATTCGGTTAGGGATTGGTGGTGGAAACAGGACAATGAGGTTGCGGGTTTGACGCCGGTTGGTGAAGGTGAGAAGGTGAAGGATTATGTGATGGATTGGATTGGTAGGGAAGTGAAAAGTGAGAAGAGTGAATTGGCGGGTGTGAATATGGGGAAGCGGGAGATGAAGAAGGAGAAGAAGAACAGGAAGCAGAAATTGGAATGGTGGGAATCAATGGACGAGGAAAATGTTGGCGGGGTTGTGAAGAAGGAGAATAGAAAGTCGGTGAGGGAATGGTGGAAGGAGGAATATTGTGAAGAGGTTGCAAAGGAGAAAAAGAAGAGGAAGAATAAGAAGATGAAAAAGGGTGTAGAAAATGATGATGAAATTAGCAATGACGATACTTGGTGGATGAGTGATGATGCATTATATGGGGATAAAAAGAAGGAAAAGAGAAGAAGCAGGAATAATCGCGGTAATGTCGATTGGTGGTTAGACGGATTCAGTGGTGAGCTATGGCGAGCACGCAGGAATAGTTTCGATTCAGCTAGTGGAGACATTCCAAAAAGTGGTGGTGTGAGTAGTACTCCAAGTATGAGAGGAACCATTTGTTATGTTGCTCCCGAGTATGGTTATGGCGATGATGTCTCCGAAAAGTGTGATGTTTATAGCTTTGGGATCTTGTTGCTTGTTATCATTTCTGGGAGACGCCCACTTCAAGTGACCGGTTCACCGTTGTCAGAGTTTCAAAGAGCTAATCTTTTGTCATGGGCACGCCACTGTGCAAGAAATGGGAAGCTCATTGAGCTGGTTGACGAGTCTATTATGTCATTGAATAAGGACCAAGCTCTGATCTGCATCAAAGTGGCTTTACTTTGTTTGCTTAAGTCACCTGTTCGGCGTCCCTCTATGAAGGAGGTTGTCGGAATGCTTAGTGGCGAGTTAGAACCACCCCAATTACCTGTTGAGTACTCACCTTCGACTCCTTCTCGATTTCCTTTCAAATCCAGGAAGAAAGGCCAAGGCCGGTAA 2037 0.4482 MLPRKLFQSQPSTSSSSPQPRHHHHILIPLLAGTAVVLTLLLFFTFLCRRTRKKRTSPFSITDDNPPHRYSYSLLRRATSSFSNPLGHGGFGTVFSGILSSKPIAVKLMDTSSHQGEREFHNELFFASKLRSLYIIPPLGFSSDPKRRRFLLVYPLMQNGNLQDALLKRKCSELFNWEKRFEILLDIAKGLCYLHSFDPPVIHGDIKPSNILLDCDFNAKIGDFGLARLKSEPVRVDVELLGIESDDDMKKRNENDDLECGGVRVVIDDCGSMESVHTGFFEEGGNLGVEQSSVASPETVEMRMTMTTALAVSPGFDKGSVKSEKDVVGVEDGKRNGKGLTSNSVRDWWWKQDNEVAGLTPVGEGEKVKDYVMDWIGREVKSEKSELAGVNMGKREMKKEKKNRKQKLEWWESMDEENVGGVVKKENRKSVREWWKEEYCEEVAKEKKKRKNKKMKKGVENDDEISNDDTWWMSDDALYGDKKKEKRRSRNNRGNVDWWLDGFSGELWRARRNSFDSASGDIPKSGGVSSTPSMRGTICYVAPEYGYGDDVSEKCDVYSFGILLLVIISGRRPLQVTGSPLSEFQRANLLSWARHCARNGKLIELVDESIMSLNKDQALICIKVALLCLLKSPVRRPSMKEVVGMLSGELEPPQLPVEYSPSTPSRFPFKSRKKGQGR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01403 678 ProSitePatterns Protein kinases ATP-binding region signature. 86 107 IPR017441 GO:0005524
Trre12g01403 678 ProSiteProfiles Protein kinase domain profile. 80 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01403 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Trre12g01403 678 Gene3D Transferase(Phosphotransferase) domain 1 513 653 - -
Trre12g01403 678 MobiDBLite consensus disorder prediction 1 21 - -
Trre12g01403 678 PANTHER OS07G0586332 PROTEIN 9 674 IPR044576 -
Trre12g01403 678 MobiDBLite consensus disorder prediction 651 678 - -
Trre12g01403 678 Gene3D Transferase(Phosphotransferase) domain 1 65 243 - -
Trre12g01403 678 SUPERFAMILY Protein kinase-like (PK-like) 58 665 IPR011009 -
Trre12g01403 678 Pfam Protein tyrosine and serine/threonine kinase 82 230 IPR001245 GO:0004672|GO:0006468
Trre12g01403 678 Coils Coil 436 456 - -
Trre12g01403 678 SMART serkin_6 80 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01403 Trre-Chr12 13990584 13992620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01403 508 646 Receptor kinase-like Gene Family AT3G58690 30.345 4.48e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Trre12g01403 PK_Tyr_Ser-Thr 1.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01403 - - lja:Lj2g3v0473820.1 864.759