Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01402 ATGCTTCCCCGTAAACTCTTTCAATCTCAGCCGTCCACTTCATCATCCTCACCACAACCACGTCACCACCACCACATCCTAATTCCTCTACTCGCCGGAACCGCCGTCGTACTAACTCTTCTCCTCTTCTTCACTTTTCTCTGCCGCCGCACCCGAAAAAAACGCACATCCCCATTCTCCATCACCGACGACAATCCACCCCACCGTTACTCCTACTCCCTCCTCCGCCGCGCCACAAGCTCGTTCTCAAACCCACTCGGCCACGGTGGCTTCGGCACCGTCTTCTCCGGCATACTTTCTTCAAAACCAATCGCTGTTAAGCTCATGGATACTTCCTCTCACCAAGGTGAACGCGAATTTCACAACGAACTCTTCTTCGCTTCAAAGCTTCGTTCTCTTTATATAATTCCTCCGTTAGGGTTTTCATCTGATCCTAAACGGCGTCGTTTTCTACTTGTTTACCCTTTAATGCAAAACGGTAATCTTCAAGATGCACTTTTGAAGCATTGTGATTTTAATGCTAAAATCGGCGATTTTGGACTTGCTCGGTTGAAATCGGAGCCGGTTAGGGTTGATGTTGAGCTTTTAGGTATTGAAAGTGATGATGATATGAAGAAAAGGAATGAAAATGATGATTTGGAGTGTGGTGGTGTTCGAGTTGTGATTGATGATTGTGGATCAATGGAGAGTGTGCATACTGGTTTTTTTGAAGAGGGTGGTAATTTGGGTGTGGAGCAATCTTCGGTGGCTTCGCCGGAAACTGTTGAGATGAGAATGACTATGACAACGGCATTGGCGGTGTCGCCGGGTTTTGATAAGGGGAGTGTGAAGAGTGAGAAGGATGTTGTTGGTGTTGAGGATGGTAAGAGGAATGGGAAAGGGTTGACGAGTAATTCGGTTAGGGATTGGTGGTGGAAACAGGACAATGAGGTTGCGGGTTTGACGCCGGTTGGTGAAGGTGAGAAGGTGAAGGATTATGTGATGGATTGGATTGGTAGGGAAGTGAAAAGTGAGAAGAGTGAATTGGCGGGTGTGAATATGGGGAAGCGGGAGATGAAGAAGGAGAAGAAGAACAGGAAGCAGAAATTGGAATGGTGGGAATCAATGGACGAGGAAAATGTTGGCGGGGTTGTGAAGAAGGAGAATAGAAAGTCGGTGAGGGAATGGTGGAAGGAGGAATATTGTGAAGAGGTTGCAAAGGAGAAAAAGAAGAGGAAGAATAAGAAGATGAAAAAGGGTGTAGAAAATGATGATGAAATTAGCAATGACGATACTTGGTGGATGAGTGATGATGCATTATATGGGGATAAAAAGAAGGAAAAGAGAAGAAGCAGGAATAATCGCGGTAATGTCGATTGGTGGTTAGACGGATTCAGTGGTGAGCTATGGCGAGCACGCAGGAATAGTTTCGATTCAGCTAGTGGAGACATTCCAAAAAGTGGTGGTGTGAGTAGTACTCCAAGTATGAGAGGAACCATTTGTTATGTTGCTCCCGAGTATGGTTATGGCGATGATGTCTCCGAAAAGTGTGATGTTTATAGCTTTGGGATCTTGTTGCTTGTTATCATTTCTGGGAGACGCCCACTTCAAGTGACCGGTTCACCGTTGTCAGAGTTTCAAAGAGCTAATCTTTTGTCATGGGCACGCCACTGTGCAAGAAATGGGAAGCTCATTGAGCTGGTTGACGAGTCTATTATGTCATTGAATAAGGACCAAGCTCTGATCTGCATCAAAGTGGCTTTACTTTGTTTGCTTAAGTCACCTGTTCGGCGTCCCTCTATGAAGGAGGTTGTCGGAATGCTTAGTGGCGAGTTAGAACCACCCCAATTACCTGTTGAGTACTCACCTTCGACTCCTTCTCGATTTCCTTTCAAATCCAGGAAGAAAGGCCAAGGCCGGTAA 1902 0.4595 MLPRKLFQSQPSTSSSSPQPRHHHHILIPLLAGTAVVLTLLLFFTFLCRRTRKKRTSPFSITDDNPPHRYSYSLLRRATSSFSNPLGHGGFGTVFSGILSSKPIAVKLMDTSSHQGEREFHNELFFASKLRSLYIIPPLGFSSDPKRRRFLLVYPLMQNGNLQDALLKHCDFNAKIGDFGLARLKSEPVRVDVELLGIESDDDMKKRNENDDLECGGVRVVIDDCGSMESVHTGFFEEGGNLGVEQSSVASPETVEMRMTMTTALAVSPGFDKGSVKSEKDVVGVEDGKRNGKGLTSNSVRDWWWKQDNEVAGLTPVGEGEKVKDYVMDWIGREVKSEKSELAGVNMGKREMKKEKKNRKQKLEWWESMDEENVGGVVKKENRKSVREWWKEEYCEEVAKEKKKRKNKKMKKGVENDDEISNDDTWWMSDDALYGDKKKEKRRSRNNRGNVDWWLDGFSGELWRARRNSFDSASGDIPKSGGVSSTPSMRGTICYVAPEYGYGDDVSEKCDVYSFGILLLVIISGRRPLQVTGSPLSEFQRANLLSWARHCARNGKLIELVDESIMSLNKDQALICIKVALLCLLKSPVRRPSMKEVVGMLSGELEPPQLPVEYSPSTPSRFPFKSRKKGQGR 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01402 633 Gene3D Phosphorylase Kinase; domain 1 62 155 - -
Trre12g01402 633 ProSitePatterns Protein kinases ATP-binding region signature. 86 107 IPR017441 GO:0005524
Trre12g01402 633 ProSiteProfiles Protein kinase domain profile. 80 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01402 633 SUPERFAMILY Protein kinase-like (PK-like) 58 620 IPR011009 -
Trre12g01402 633 Coils Coil 391 411 - -
Trre12g01402 633 SMART serkin_6 80 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01402 633 MobiDBLite consensus disorder prediction 1 21 - -
Trre12g01402 633 PANTHER OS07G0586332 PROTEIN 171 629 IPR044576 -
Trre12g01402 633 Pfam Protein tyrosine and serine/threonine kinase 82 185 IPR001245 GO:0004672|GO:0006468
Trre12g01402 633 Gene3D Transferase(Phosphotransferase) domain 1 468 608 - -
Trre12g01402 633 MobiDBLite consensus disorder prediction 606 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01402 Trre-Chr12 13990584 13992620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01402 489 626 Receptor kinase-like Gene Family AT1G53430 39.716 1.49e-19 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Trre12g01402 PK_Tyr_Ser-Thr 5.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01402 - - lja:Lj2g3v0473820.1 776.163