Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01399 ATGGAAGATAACAAGAAGTGGATGCATAAAGAGACAGAAAGGCAAAGAAGACAAGAGATGACCAACCTCTGCACCTCTCTTAGATCTCTTCTTCCTTTAGAGTATATTAAGGGAAAGCGCTCAATTTCCGATCATGTGAATGAAGCTATTAATTATATCAACCACCTACAAAACAAGGTGAAACAATTAGAAGCTAAGAAGGAAGATTTAATGAAGGTATCTAATTTGAATAAAAATATCCCTCAAAATGGCTCTAGTAGTACTAGTAGTACCAATCTTCAACCCTTTGTTATTGTTCAACCTTTCCCTGGAGGACTTGAGATTGTGTGCAGTTACACCTCCAAGAAATGTTTGTTTCCTTTGTCAAGAGTGCTAGATGTGCTGCTTAAAGAAGGGCTTAATGTGATAAGTAGTAATTGCACCAAAATAGATGGAAGATTCATATACACTATAAGATCTGAGGATCCAATAATAGGCTTTGATTACTCTCAACTACAAAGAAAGCTTACGGATGCAATATCATGCACAAGTTTGCAAGAGAGTTCGTCTGAACCTGGAATTCACAATATCTTGAGATAA 579 0.3644 MEDNKKWMHKETERQRRQEMTNLCTSLRSLLPLEYIKGKRSISDHVNEAINYINHLQNKVKQLEAKKEDLMKVSNLNKNIPQNGSSSTSSTNLQPFVIVQPFPGGLEIVCSYTSKKCLFPLSRVLDVLLKEGLNVISSNCTKIDGRFIYTIRSEDPIIGFDYSQLQRKLTDAISCTSLQESSSEPGIHNILR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01399 192 CDD bHLH_AtORG2_like 5 79 - -
Trre12g01399 192 FunFam Transcription factor bHLH126 1 84 - -
Trre12g01399 192 Coils Coil 46 73 - -
Trre12g01399 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 73 IPR036638 GO:0046983
Trre12g01399 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Trre12g01399 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 171 - -
Trre12g01399 192 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Trre12g01399 192 Gene3D - 1 85 IPR036638 GO:0046983
Trre12g01399 192 SMART finulus 10 62 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01399 Trre-Chr12 13966787 13968686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01399 3 169 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.690 1.64e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g01399 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01399 - - ccaj:109791323 251.906