Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01398 ATGAAAAACAACCATAAAAATTATCAAGACAAGATTATAGGATATTGTTATATCATGGAAGATAACAAGAAGTGGATGCATAAAGAGACAGAAAGGCAAAGAAGACAAGAGATGACCAACCTCTGCACCTCTCTTAGATCTCTTCTTCCTTTAGAGTATATTAAGGGAAAGCGCTCAATTTCCGATCATGTGAATGAAGCTATTAATTATATCAACCACCTACAAAACAAGGTGAAACAATTAGAAGCTAAGAAGGAAGATTTAATGAAGGTATCTAATTTGAATAAAAATATCCCTCAAAATGGCTCTAGTAGTACTAGTAGTACCAATCTTCAACCCTTTGTTATTGTTCAACCTTTCCCTGGAGGACTTGAGATTGTGTGCAGTTACACCTCCAAGAAATGTTTGTTTCCTTTGTCAAGAGTGCTAGATGTGCTGCTTAAAGAAGGGCTTAATGTGATAAGTAGTAATTGCACCAAAATAGATGGAAGATTCATATACACTATAAGATCTGAGGATCCAATAATAGGCTTTGATTACTCTCAACTACAAAGAAAGCTTACGGATGCAATATCATGCACAAGTTTGCAAGAGAGTTCGTCTGAACCTGGAATTCACAATATCTTGAGATAA 633 0.3523 MKNNHKNYQDKIIGYCYIMEDNKKWMHKETERQRRQEMTNLCTSLRSLLPLEYIKGKRSISDHVNEAINYINHLQNKVKQLEAKKEDLMKVSNLNKNIPQNGSSSTSSTNLQPFVIVQPFPGGLEIVCSYTSKKCLFPLSRVLDVLLKEGLNVISSNCTKIDGRFIYTIRSEDPIIGFDYSQLQRKLTDAISCTSLQESSSEPGIHNILR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01398 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 91 IPR036638 GO:0046983
Trre12g01398 210 Coils Coil 64 91 - -
Trre12g01398 210 FunFam Transcription factor bHLH126 17 102 - -
Trre12g01398 210 CDD bHLH_AtORG2_like 23 97 - -
Trre12g01398 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 22 74 IPR011598 GO:0046983
Trre12g01398 210 Gene3D - 18 103 IPR036638 GO:0046983
Trre12g01398 210 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 21 189 - -
Trre12g01398 210 SMART finulus 28 80 IPR011598 GO:0046983
Trre12g01398 210 Pfam Helix-loop-helix DNA-binding domain 24 75 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01398 Trre-Chr12 13966787 13968740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01398 21 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.690 2.70e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g01398 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01398 - - ccaj:109791323 252.677