Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01396 ATGCCTTTAGGTTGCCCTCAATGTAAGGAAGGACTTGCACCTGAGATTCCTGAGGATCTTTACCATTTGATTAAAAAGGTTGTTTCAATCCGACTTGCACCTGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTTTCAATCCGTAACCATCTTGAGAGGAACATAAAGGACAAGGACTCAAAGTTCAGACTCATCCTTGTTGATAGCAGAATCCACCGCCTTGCTCGCTACTACAAGAAAACTAAGAAGCTTCCCCCTGTGTGGAAATATGAATCAACTACTGCCACCAACGCTTTGCACTCTTTTTTTTGTTCCAAATCAACTACTGCAAATCTACCTGCTAATCAGGTTATATCGGATTTTGCCTTCTTGTCTTTTGGTGGTGGACCTCGAAAATGTGTTGGGGACCAATTTGCTCTCAGGGAGCCCACTGTAGCACTGACTATGCTGATCTTACCTTAA 471 0.4246 MPLGCPQCKEGLAPEIPEDLYHLIKKVVSIRLAPEIPEDLYHLIKKVVSIRNHLERNIKDKDSKFRLILVDSRIHRLARYYKKTKKLPPVWKYESTTATNALHSFFCSKSTTANLPANQVISDFAFLSFGGGPRKCVGDQFALREPTVALTMLILP 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01396 156 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 129 138 IPR017972 GO:0005506|GO:0016705
Trre12g01396 156 Gene3D - 34 102 - -
Trre12g01396 156 Pfam Ribosomal protein S15 35 94 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre12g01396 156 FunFam 40S ribosomal protein S13 35 103 - -
Trre12g01396 156 Gene3D Cytochrome P450 110 155 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g01396 156 ProSitePatterns Ribosomal protein S15 signature. 50 80 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre12g01396 156 SUPERFAMILY Cytochrome P450 120 154 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g01396 156 SMART Ribosomal_S15_2 25 101 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre12g01396 156 Pfam Cytochrome P450 118 154 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre12g01396 156 CDD Ribosomal_S15p_S13e 34 95 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre12g01396 156 SUPERFAMILY S15/NS1 RNA-binding domain 33 94 IPR009068 -
Trre12g01396 156 PANTHER RIBOSOMAL PROTEIN S15P/S13E 10 31 IPR023029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01396 Trre-Chr12 13937930 13941626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01396 32 100 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 89.855 3.89e-40 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01396 K02953 - mnt:21408265 131.339