Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01393 ATGTCGTTATTTTCATTAACAAAATTTACATTTCTTTTCTCCTTAATATTAACATTCCTCTTAATGTTAAACTCAACCAAACCCCAAACACTATCACCAAAACCATGCAACAATCCTTACAAACAACTCAACCTTATCCTTAATCCAAACGGAACAATAACACGACCAAACAAACCACCCGAGTCGCCTCCATCAGTAGATCCCACCCTCCCCGTTCTCTCCAAGGATCTCATCATTAATCAATCAAAAGGCACGTGGGCTCGGATCTATGTGCCCCGCGAAACATTGAATCAATACTCCAAAAAACTTCCTCTTGTGATTTTTTTCCATGGTGGTGGGTTCATTTATCTTAGTGCGGCATCAACGATTTTCCATGATTTTTGCTTCAACATGGCAAATGACATTGCAGCAGTTGTTGCATCTATTGAGTATCGTCTCGCCCCAGAGCATAGACTCCCAACTGCATATGAAGATGCAGTTGAGGCTCTGCACTTGATCAAAACTAATTATCAATTAGATGATTGGCTTAAAAACCATGTTGATTTTTCTAGTGTTTTTCTTATGGGTAGTAGTGCAGGGGGAAACATAGCGTATAACACGGGTCTACGTGTAGAAGATGGAGATAGTGAAATTTCGAAGATGATTAAAGGACTTATACTAGTTCAACCTTTTTTTAGTGGAATCCATAGGACGGATTCCGAACTTAGGCATGTTAATGATTCTCATTTATCATTGTGTAACAATGATGCGTTGTGGGAATTGTCGTTACCCGTTGGTGCTAACCGTGATCATGAGTATTGCAATCCAACGGTTGGAGATAATGTTTTGAGATTCCAAAACATTAGACGACTTGGATGGAGTGTGTTGGTTACTGATTGTGACGGTGATCCACTTGTGGATCGTTCGATTGAGTTGGTGAGATTGATGAAGAAAAAGGGAGTGAGGGTTATGGGACATTTTACAAAAGGAGATTATCATGGTGTTCAAGATAGTGAGCCATTGAAAGCTAGGGAACTCTTTGTGGTGATTAAAAAGTTCATTTTATCTTTGCCTAATAAGGCAATTGATTGA 1071 0.3931 MSLFSLTKFTFLFSLILTFLLMLNSTKPQTLSPKPCNNPYKQLNLILNPNGTITRPNKPPESPPSVDPTLPVLSKDLIINQSKGTWARIYVPRETLNQYSKKLPLVIFFHGGGFIYLSAASTIFHDFCFNMANDIAAVVASIEYRLAPEHRLPTAYEDAVEALHLIKTNYQLDDWLKNHVDFSSVFLMGSSAGGNIAYNTGLRVEDGDSEISKMIKGLILVQPFFSGIHRTDSELRHVNDSHLSLCNNDALWELSLPVGANRDHEYCNPTVGDNVLRFQNIRRLGWSVLVTDCDGDPLVDRSIELVRLMKKKGVRVMGHFTKGDYHGVQDSEPLKARELFVVIKKFILSLPNKAID 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01393 356 SUPERFAMILY alpha/beta-Hydrolases 57 334 IPR029058 -
Trre12g01393 356 Gene3D alpha/beta hydrolase 40 350 IPR029058 -
Trre12g01393 356 PANTHER ARYLACETAMIDE DEACETYLASE 50 327 - -
Trre12g01393 356 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 106 122 IPR002168 GO:0016787
Trre12g01393 356 Pfam alpha/beta hydrolase fold 106 328 IPR013094 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01393 Trre-Chr12 13907435 13908505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01393 50 327 Carbohydrate Esterase AT5G16080 37.413 2.75e-56 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01393 - - tpra:123907026 645.58