Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01387 ATGGCCAGAGCTTTAGATTTCATTAAGGATATCAACGATGGAAAGGAACTTTGGAAATTTGCTGTCCGACTGAAAGATATTTGGAAAACTGGTATAGGGAAAGGTGAACACTTGGAGTTTATCATTCTCGACAAACAAGGAGATAACATTCAAGTTGTTCTTCCATCTGATCTTTGCCCTTTGTTTGAGTCTAAACTTGAAGAAGGAGCCACATACACTATGAAAAATTTTAAAGTTCAGCCAAATGATGGGAAGGTCAAATTTTGTGATCACCCTTTCACATTGGTTGCATTTGCCGGTGATGGAGGATCTGATATTATTCCAACAAAGATACCAAACATTCCAAACTATAAGTTTAATTTCAAATCTTTTGATGATATCAAACATGGCAAGTACCGCGCTGATATGTTAGTAGATATCATAGGTGTCGTGCATGAGGTTAAACCGGATAAAAAATCATTTGGATCAAAGAAACTCCCAAGGACCTTTTCTTTGGTTGATGCGTCGATGAACATACTTACATGCTCTCTGTGGGGTAAGTATCAAACTGAATTTCTTGCCAAATACAACGAGAACGCCTGTGGAGGTCCAGTTGTTGTCATTCTTAAACATGCTGCTATCAAGGAACCTGAAGGTATATATGACTTACAAATTACAAATGCATGGAGTGGAACAAAGTTAATCATGGATCAAGATTTTAAAGAGGCAAAAGACTTCAAAGAATTCTTACCTCCGGATTTTATCGCCCAAACTCAATCTTCAAACAACTTAAGTGAGGGTAGCAGTTTACAAATACAAAACTCTCAAAGTTCTCAGTATTCTGCAGGATCTCGCTATGCCTTTCGTGCCCCAGTCACTCACATTAGTCAACTCATCACACTCCCGAAGGATGAAATCGTAACTACTGTTGCCACACCACACCATGTTTGCTTATCAAAACATGGGTGGTATTACAAATCTTGTGCTGAATGCTCTAAACAACTTATTACTGATACACCACCTTACAAATGCAAAGTTGATGCACATGTCACTCCTGAACCAATTATCAAATACAGGGTTGAAGCTGAAGTTCGTTATGAAGGTCATAAAGCAAAATTCCTTTTCTGGGACCGTGAATTTACCGATCTCATAGGCAAAACTGCATCTGAGTTGCAGGCTATTATGCTTGAAGCTGGTGCATTTGACCCCCATGAATATCGTGCTGACTTAGACAAAATCACAGGAAAGGAATTAGCTTTTAAAGTCAAGATTCAGGCCAAAGAAAAACTTTCAAGTGTCCTTACATTGAAAGATGATCCTGAAATCATCCAATATCTCAAAGACCAACTCATCCTTACTGAGATCCCATCTCAGTTGTCTCTCCCTGCTACAAATCTTGGAGAGTCTTCTCAATTGCTTCTAACACCTATTCCTGAAACATCTGATATCTCTGCTTTTCCAACTTCTTCTCAATTGCTTCTAACACCTATTTCTGAAACATCTGATATCTCTGCTTTTCCAACTCAAGACCTCTCCGCTACCGCTGAGTCTGAACCAAATATGATGAAAATGCACACCCCTGCAAAACGTTCAGGGGAAGAAGCTCCAACTGATGATCCAAACTCTGCCAAGCTATCTTCAAACAAAATCACTCTCAGGTCTACAATCAAGAAATAA 1656 0.3901 MARALDFIKDINDGKELWKFAVRLKDIWKTGIGKGEHLEFIILDKQGDNIQVVLPSDLCPLFESKLEEGATYTMKNFKVQPNDGKVKFCDHPFTLVAFAGDGGSDIIPTKIPNIPNYKFNFKSFDDIKHGKYRADMLVDIIGVVHEVKPDKKSFGSKKLPRTFSLVDASMNILTCSLWGKYQTEFLAKYNENACGGPVVVILKHAAIKEPEGIYDLQITNAWSGTKLIMDQDFKEAKDFKEFLPPDFIAQTQSSNNLSEGSSLQIQNSQSSQYSAGSRYAFRAPVTHISQLITLPKDEIVTTVATPHHVCLSKHGWYYKSCAECSKQLITDTPPYKCKVDAHVTPEPIIKYRVEAEVRYEGHKAKFLFWDREFTDLIGKTASELQAIMLEAGAFDPHEYRADLDKITGKELAFKVKIQAKEKLSSVLTLKDDPEIIQYLKDQLILTEIPSQLSLPATNLGESSQLLLTPIPETSDISAFPTSSQLLLTPISETSDISAFPTQDLSATAESEPNMMKMHTPAKRSGEEAPTDDPNSAKLSSNKITLRSTIKK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01387 551 SUPERFAMILY Nucleic acid-binding proteins 7 97 IPR012340 -
Trre12g01387 551 MobiDBLite consensus disorder prediction 533 551 - -
Trre12g01387 551 CDD RPA1_DBD_A_like 22 93 - -
Trre12g01387 551 CDD RPA1_DBD_B_like 139 244 - -
Trre12g01387 551 Gene3D - 263 431 IPR012340 -
Trre12g01387 551 SUPERFAMILY Nucleic acid-binding proteins 289 419 IPR012340 -
Trre12g01387 551 SUPERFAMILY Nucleic acid-binding proteins 119 248 IPR012340 -
Trre12g01387 551 Gene3D - 113 245 IPR012340 -
Trre12g01387 551 Pfam Replication protein A OB domain 133 209 IPR031657 -
Trre12g01387 551 Gene3D - 5 100 IPR012340 -
Trre12g01387 551 MobiDBLite consensus disorder prediction 506 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01387 Trre-Chr12 13833726 13836801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01387 1 421 Core DNA Replication Machinery Family AT5G08020 20.460 9.48e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01387 - - tpra:123891620 310.071