Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01386 ATGGGAAGAGGGAGAATAGTTTTGGAGAGAATAGAGAATAAGATCAATAGGCAAGTAACATTCTCAAAGAGAAGGAGTGGATTGTTGAAGAAAGCTTTTGAGCTTTGTGTGCTATGTGATGCTGAAGTAGCACTTATCATCTTTTCAAGCCGTGGCAAGCTTTTCCAATACAGCAGCACAGATATTAACAAAATCATTGAAAGGTATCGCCAATGTCGCTACAACAAGTTACAAGCTGGCAATTCATTAGGACAAAATGACTCACAGAATTTATATCAGGAGTACTTGAAACTAAAGGCAAGATATGAATCTCTTGACCGAAAGCAGAGGCATTTTCATGGGGAAGAACTTGAGGAACTTAGCATGGAGGAATTGGAGAGCCTCGAGGAACGACTAGAATTAACGCTTACACAAGCTCGACAACTACAAATGAAGAAGCTCTTTGCACGAGCAGAGGAACTACGTGAAAAAGTACATAACTTGGAGGAGCTTAACAAATATTTGGAGCCCAAGGGAATAGATGAATATTCAAACATCCTTGCTGACAAAACAAGCCATATTCAATTGGAAGCTATAGAAGCCAATCATTTTGAATAA 597 0.3903 MGRGRIVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDINKIIERYRQCRYNKLQAGNSLGQNDSQNLYQEYLKLKARYESLDRKQRHFHGEELEELSMEELESLEERLELTLTQARQLQMKKLFARAEELREKVHNLEELNKYLEPKGIDEYSNILADKTSHIQLEAIEANHFE 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01386 198 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre12g01386 198 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre12g01386 198 Coils Coil 88 108 - -
Trre12g01386 198 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Trre12g01386 198 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Trre12g01386 198 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Trre12g01386 198 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Trre12g01386 198 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Trre12g01386 198 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre12g01386 198 Coils Coil 122 164 - -
Trre12g01386 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre12g01386 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre12g01386 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre12g01386 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre12g01386 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01386 Trre-Chr12 13788837 13795368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01386 1 171 MADS-box Gene Family AT2G45650 53.801 9.55e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre12g01386 K-box 7.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01386 K09264 - gmx:100793681 251.136