Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01359 ATGCAAGAGTCAGAAGAAGAAAATCATGACCTTCCTCAAAAGTCAAAGCCACTAGAGGAAAATGGATTTTCCATGGATTTTGATATTGACTTTGAAAATTCATGGCCTTTGGATCATATATCTAACACTATGTATCCTTTTCTTTTATCCAATACCTCTGAACAACAACACTTTTCTCCTATTTGGACTTTTTCTGATGCTGAAGATGACAGCATTGCAGCTTCAGGTAACAAAACAAAGACAGTAACCGAAAACCGAGTCGAAAATGACGACAAGAAAAAACATGTGACACACCACCATGTAGAAGCATTTCCACCTTTACAAAATCCACATGGTTATTGTCTAATCAAGGAAAGAATGACACAAGCTCTTAGGCAATTCAAAGAGTTAACCGAACAGACTGTTCTAGCTCAAGTTTGGGCGCCGGTTAGGAACGGAAATCGGTATAAACTCACAACTTCAGGCCAACCATTTGTTCTTGATCCGCATAGTAATGGACTTCATCAGTATAGAACAGTTTCTTTGATGTATATGTTTTCTGTTGATGGCGAAAACGATGAAATTTTAGGGCTTCCTGGAAGAGTTTTTCAGCAGAAGTTACCGGAATGGACTCCGAATGTTCAGTATTATTCTAGTAAAGAATATTCAAGGCTAAATCATGCTTTACATTACAATGTTCGTGGAACTTTGGCGTTGCCGGTGTTTGAACCTCCGGGACAATCGTGCGTTGCTGTGTTGGAATTGATTATGACTTCACAGAAGATTAATTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCACTTGAGGCAGTAAATTTGAGGAGTTCAGAGATTTTGGAGCATCCATACAGTCAGATTTGTAACGAAGACCGACAGAATGCATTATCCGAGATTTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTTTGGCACAAACTTGGGTTCCTTGTAGGCATAGAAGTGTTTTGGCTCATGGTGGTGGTCTTAAGAAAAGTTGTTCGAGTTTTGATGGTTATTGTATGGGACAAGTTTGCATGTCTATAACCGAGGTAGCATTTTACGTAATAGATTCTCATACATGGGGTTTCCATGATGCATGTGTTGAGCATCACTTACAACAAGGTCAAGGAGTTGCCGGTCGAGCTTTTTTGTCGCAAAATATGTGTTTCTGTGAAAATATTACTCAATTCTGCAAAACCGATTACCCTTTAGTACATTACGCTCTAATGTTTGATTTAACAAGCTGTTTTTCGATCTGTTTACAAAGTTCTCATACCGGAAATGATGAATATGTACTAGAGTTTTTTCTGCCTCCTAGTATCAATGAATTTTGTGAACATAAGGCTTTGTTGGGATCGATATTAGCAACGATGAAACAAAATTTCCAAAGTCTTAAGGTTGCTTCTGGTTTTGAACTTGAGGAGCATGGATCAATTGAAATTGTTGAAATATTAAATGGAAGAGTTCATTCGAGGCTTGAATATGTTCCGATTATTCAATCTGCTAAATTATCAACTAGACATGATGATGCCTCGCCGAATATGGAGGAGGGAGTGCTTCCACTAGATCCATTACTACAGAAAGTTGTCACAAGTTTTGATGACATAAATGATAGAGGGATTCTTGATGATAATGCAGGTGGAAGCATTGGTCGGATCTCTTCCTTGGAGACAAAATCCAAAAAGAAAACCTCCCAAAGAAAACGCGGAAAAGCTGAGAAATCAATTAGTCTTGATGTGTTGCAAAACTATTTCAGTGGGAGTCTAAAGGATGCTGCAAAGAGCCTAGGAGTCTGTCCTACTACAATGAAGCGAATCTGCAGGCAGCATGGAATATCCCGTTGGCCATCTCGAAAGATAAAAAAGGTTAACCGTTCCTTATCAAAGCTCAAGTGCGTTATTGAATCTGTCCATGGTGTTGAAGGAGCATTTGGTTTGAATTCTCCAACTACAAGTCCACTCGATATTGCTTCCGGTTCCTTTAATGAACCTTCTACTTCAAACAAGTTCGAACACCAAACCTCATTAAGCATAATGCCATCAGAACCTAAGATGAACGAAAATGATTTCGATGCTTCGAAATCACAACCTCAAGAACCATTTATAGGAATGCTAATTGAAGGTGCAGATAGTTCTAAAGACATGAAAAATATGTGTCCTTTAGCAGATGCTGTTTTGGAGGATCAAATCCTCGAAGCTTCAAGGACTAATCCTCCATGTTTTGATTTTGCTCCTATAGCTCAGAAAGAGATGAAGATTGTGACTATTAAGGCAACATATAGAGATGATATAATAAGGTTTAGGGTGTCTTTGAACTGTGGCATTGTGGAATTGAGAGAAGAAATTTCCAAAAGGTTGAAATTAGAGGTAGGGACATTTGATATCAAGTATTTGGATGATGATCAAGAGTGGATTTTGGTTGCATGTGATGCTGACTTGCAAGAGTGCATGGATGTTTTAACATCATCAGGCAGCAATACTATTAGGCTTGTTGTGCATGATATTGTGTCCATTCTTGGAAGCTCTGTTGAGAGCTCAGTGTAG 2553 0.3862 MQESEEENHDLPQKSKPLEENGFSMDFDIDFENSWPLDHISNTMYPFLLSNTSEQQHFSPIWTFSDAEDDSIAASGNKTKTVTENRVENDDKKKHVTHHHVEAFPPLQNPHGYCLIKERMTQALRQFKELTEQTVLAQVWAPVRNGNRYKLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDEILGLPGRVFQQKLPEWTPNVQYYSSKEYSRLNHALHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILEHPYSQICNEDRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGYCMGQVCMSITEVAFYVIDSHTWGFHDACVEHHLQQGQGVAGRAFLSQNMCFCENITQFCKTDYPLVHYALMFDLTSCFSICLQSSHTGNDEYVLEFFLPPSINEFCEHKALLGSILATMKQNFQSLKVASGFELEEHGSIEIVEILNGRVHSRLEYVPIIQSAKLSTRHDDASPNMEEGVLPLDPLLQKVVTSFDDINDRGILDDNAGGSIGRISSLETKSKKKTSQRKRGKAEKSISLDVLQNYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGVEGAFGLNSPTTSPLDIASGSFNEPSTSNKFEHQTSLSIMPSEPKMNENDFDASKSQPQEPFIGMLIEGADSSKDMKNMCPLADAVLEDQILEASRTNPPCFDFAPIAQKEMKIVTIKATYRDDIIRFRVSLNCGIVELREEISKRLKLEVGTFDIKYLDDDQEWILVACDADLQECMDVLTSSGSNTIRLVVHDIVSILGSSVESSV 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01359 850 PANTHER PROTEIN NLP8 54 849 IPR045012 GO:0003700
Trre12g01359 850 SMART PB1_new 756 838 IPR000270 GO:0005515
Trre12g01359 850 MobiDBLite consensus disorder prediction 556 575 - -
Trre12g01359 850 MobiDBLite consensus disorder prediction 1 20 - -
Trre12g01359 850 ProSiteProfiles PB1 domain profile. 756 838 IPR000270 GO:0005515
Trre12g01359 850 Pfam RWP-RK domain 579 626 IPR003035 -
Trre12g01359 850 MobiDBLite consensus disorder prediction 1 16 - -
Trre12g01359 850 CDD PB1_NLP 757 837 IPR034891 -
Trre12g01359 850 Pfam PB1 domain 757 837 IPR000270 GO:0005515
Trre12g01359 850 Gene3D - 753 837 - -
Trre12g01359 850 ProSiteProfiles RWP-RK domain profile. 563 646 IPR003035 -
Trre12g01359 850 SUPERFAMILY CAD & PB1 domains 754 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01359 Trre-Chr12 13504509 13509281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01359 171 849 NLP Transcription Factor Family AT1G64530 56.039 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre12g01359 PB1 7.4e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01359 - - mtr:25479714 1479.54