Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01346 ATGCCACTGCCAGTTGCAAAACTCAAGGCCTCTGACACTCCAGATGTCACGCGAACAGAAGACGGAATAGATACTATTATCAGACAAGCAATTGGAAAAGAACCTTTATTTTATTTTCCGAGGGGCGGTGACAGCCCGGGACAGTTGATTCAATTACTCAATACTTTTGATCAGCATGGTGTTACCAATATTTATTCAGAATATCCGGGGTGGCCTTTGCTCTATCCTCTGAAGGCTCCATCTGAAAAATGTGAGAAATGTTCTAAAGAGTTTTGCTCCACCATTAACTATAGAAGACATTCACCTGTACATCACCGATTCAGAAAGCTTGATAAGGATACTTCCAAAACCAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCTGTAGAAGAGGCGAAGGAAGTTCTATCTTTAGAAAATGTGATGCTGGAGGAAGTTCCAGGGTCTACGGTTTTGGATGCATTGATCACTCTTAATCAAAAACAAGGATGTTTTTTACTTCCGCAATGTTATATGAGGGCTGGTGTTGCCCTATTGGATATTCTTCAATCTAAACCTTCCAGTTTACCTATACCTTCCCGGGAATTGTTCAGTATCCTAGATGATGCTAGTGAAAGAACATTTTTATTGGGGACATCAGTGTCAATGCAAAAACATGTTTTTCAAGGAGGGTCTGGAAAAATTGGACTTCAACCCAAAAACATAGTTGCTTGCATAAGCTTCTTGCTAGAACAGATATTGGTTAAGGCATGGCTTGCTGACAAGGATGCTGAAGCACTGAGGTGCCAGAAACAACTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGAAGAGGAAACGCCAGAAAAAGCTTAGACAAAAAGAGCAGCGGGCTAGGGAACAAAGGCTCAAGCTTGAGGAAGAAACTAAAGAGAATGTTGACAGTACACTGAAGACTCTATCACCAGCAGAATGTTTTTTGGATGCATATGATTTTGAAGCTCAAAATCCAGAGGAGTTTACAAATAACACTCCTTCACATGTACCTTTTCAATTTCCTGATGTCAATGAAGAAAAAGATGGGGATACTCGATCTGGACTTGCTTTTGGCTCGGATCAGATTATTGGACAGTCAGAACATGGACTTGATCAGCCCTGCAGAGCAGTTGCTAGATGGCAGGAGCTGCCAAAATCCCCCCAACGCACAGTAGTCAGTGATCTGCATACAAACAAGAATCCTCCAATTTTAAATCCTGATGAAGTCATTCAGAGTTATGGAACCCGCAATGATCAGAGGGCAGATGCTATAGTTAATGCTGGTAAAGCATGTAATAGGAAGCCAACACCTGAAATTGACAGGATGGTTTTAAAAACCATAGCAAAGACTGAACCAGACCCAGTTAATCATGAAGTTTTGATCGGATCTATATCCGTCAATCTTGGAAAATGCAGCCAATCAGAGGGTAATGTGGTGGTATCTCGAGACTGCTCAGTTGAGAATGTGGATAACAAGAATAATTCTCAGGATAAACCAAAGAAACCTGATTTAGTGAAGAGTGGAAACAATCAAGCAACAGTTAAGACTTCAACACCAGTTAGTCAGTTTGAAACTAAAGATTCATTTCCAGTTCAAAGTCATGGGACCAAAGTTGATGCAGGAAGTAGAGATGAAGGTTGTCAAAACTCGTCAAGGTTGGCTAGTGATGGTAACGATGTTGGTTTTAAAATGAAAATCTCCAATCTCGAGGGTCACTTAGATCCAGGAAAGTTCCAGTTTAATATCCAGGCTGCAAAAGCCTTTCTTGCACAAAGATGGGAAGAAGCTATATCATCACATCATGTGAAATTGGTTATTTCCCTTGACTCTGAACCTCCTGGTAGCCAGGAGATACAGGATTTGAAGGTAGCAGCAGCATGTGGATCTTCTGATGGTGATGATGGAAGCAGCAACATTCCGGCAAAAACAGTTAATAAGTTGTTTTCAACTACCAAAGCTTCTAAGTCCAAACGCAGAGGGAAGTCTAAAAAGGGAACCAATTACAAGTATAATCCTACAGAGAAAATAGCCTAA 2067 0.4112 MPLPVAKLKASDTPDVTRTEDGIDTIIRQAIGKEPLFYFPRGGDSPGQLIQLLNTFDQHGVTNIYSEYPGWPLLYPLKAPSEKCEKCSKEFCSTINYRRHSPVHHRFRKLDKDTSKTRDLLGAYWDKLSVEEAKEVLSLENVMLEEVPGSTVLDALITLNQKQGCFLLPQCYMRAGVALLDILQSKPSSLPIPSRELFSILDDASERTFLLGTSVSMQKHVFQGGSGKIGLQPKNIVACISFLLEQILVKAWLADKDAEALRCQKQLVEEEEAAQKRQAEILKRKRQKKLRQKEQRAREQRLKLEEETKENVDSTLKTLSPAECFLDAYDFEAQNPEEFTNNTPSHVPFQFPDVNEEKDGDTRSGLAFGSDQIIGQSEHGLDQPCRAVARWQELPKSPQRTVVSDLHTNKNPPILNPDEVIQSYGTRNDQRADAIVNAGKACNRKPTPEIDRMVLKTIAKTEPDPVNHEVLIGSISVNLGKCSQSEGNVVVSRDCSVENVDNKNNSQDKPKKPDLVKSGNNQATVKTSTPVSQFETKDSFPVQSHGTKVDAGSRDEGCQNSSRLASDGNDVGFKMKISNLEGHLDPGKFQFNIQAAKAFLAQRWEEAISSHHVKLVISLDSEPPGSQEIQDLKVAAACGSSDGDDGSSNIPAKTVNKLFSTTKASKSKRRGKSKKGTNYKYNPTEKIA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01346 688 Coils Coil 258 310 - -
Trre12g01346 688 MobiDBLite consensus disorder prediction 640 688 - -
Trre12g01346 688 MobiDBLite consensus disorder prediction 498 565 - -
Trre12g01346 688 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Trre12g01346 688 MobiDBLite consensus disorder prediction 293 311 - -
Trre12g01346 688 MobiDBLite consensus disorder prediction 642 662 - -
Trre12g01346 688 ProSitePatterns Zinc finger C2H2 type domain signature. 84 105 IPR013087 -
Trre12g01346 688 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 686 - -
Trre12g01346 688 MobiDBLite consensus disorder prediction 517 543 - -
Trre12g01346 688 MobiDBLite consensus disorder prediction 284 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01346 Trre-Chr12 13414165 13425776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01346 21 687 C2H2 Transcription Factor Family AT4G25610 38.405 5.72e-118 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01346 - - tpra:123909032 969.918