Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01345 ATGCCACTGCCAGTTGCAAAACTCAAGGCCTCTGACACTCCAGATGTCACGCGAACAGAAGACGGAATAGATACTATTATCAGACAAGCAATTGGAAAAGAACCTTTATTTTATTTTCCGAGGGGCGGTGACAGCCCGGGACAGTTGATTCAATTACTCAATACTTTTGATCAGCATGAATATCCGGGGTGGCCTTTGCTCTATCCTCTGAAGGCTCCATCTGAAAAATGTGAGAAATGTTCTAAAGAGTTTTGCTCCACCATTAACTATAGAAGACATTCACCTGTACATCACCGATTCAGAAAGCTTGATAAGGATACTTCCAAAACCAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCTGTAGAAGAGGCGAAGGAAGTTCTATCTTTAGAAAATGTGATGCTGGAGGAAGTTCCAGGGTCTACGGTTTTGGATGCATTGATCACTCTTAATCAAAAACAAGGATGTTTTTTACTTCCGCAATGTTATATGAGGGCTGGTGTTGCCCTATTGGATATTCTTCAATCTAAACCTTCCAGTTTACCTATACCTTCCCGGGAATTGTTCAGTATCCTAGATGATGCTAGTGAAAGAACATTTTTATTGGGGACATCAGTGTCAATGCAAAAACATGTTTTTCAAGGAGGGTCTGGAAAAATTGGACTTCAACCCAAAAACATAGTTGCTTGCATAAGCTTCTTGCTAGAACAGATATTGGTTAAGGCATGGCTTGCTGACAAGGATGCTGAAGCACTGAGGTGCCAGAAACAACTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGAAGAGGAAACGCCAGAAAAAGCTTAGACAAAAAGAGCAGCGGGCTAGGGAACAAAGGCTCAAGCTTGAGGAAGAAACTAAAGAGAATGTTGACAGTACACTGAAGACTCTATCACCAGCAGAATGTTTTTTGGATGCATATGATTTTGAAGCTCAAAATCCAGAGGAGTTTACAAATAACACTCCTTCACATGTACCTTTTCAATTTCCTGATGTCAATGAAGAAAAAGATGGGGATACTCGATCTGGACTTGCTTTTGGCTCGGATCAGATTATTGGACAGTCAGAACATGGACTTGATCAGCCCTGCAGAGCAGTTGCTAGATGGCAGGAGCTGCCAAAATCCCCCCAACGCACAGTAGTCAGTGATCTGCATACAAACAAGAATCCTCCAATTTTAAATCCTGATGAAGTCATTCAGAGTTATGGAACCCGCAATGATCAGAGGGCAGATGCTATAGTTAATGCTGGTAAAGCATGTAATAGGAAGCCAACACCTGAAATTGACAGGATGGTTTTAAAAACCATAGCAAAGACTGAACCAGACCCAGTTAATCATGAAGTTTTGATCGGATCTATATCCGTCAATCTTGGAAAATGCAGCCAATCAGAGGGTAATGTGGTGGTATCTCGAGACTGCTCAGTTGAGAATGTGGATAACAAGAATAATTCTCAGGATAAACCAAAGAAACCTGATTTAGTGAAGAGTGGAAACAATCAAGCAACAGTTAAGACTTCAACACCAGTTAGTCAGTTTGAAACTAAAGATTCATTTCCAGTTCAAAGTCATGGGACCAAAGTTGATGCAGGAAGTAGAGATGAAGGTTGTCAAAACTCGTCAAGGTTGGCTAGTGATGGTAACGATGTTGGTTTTAAAATGAAAATCTCCAATCTCGAGGGTCACTTAGATCCAGGAAAGTTCCAGTTTAATATCCAGGCTGCAAAAGCCTTTCTTGCACAAAGATGGGAAGAAGCTATATCATCACATCATGTGAAATTGGTTATTTCCCTTGACTCTGAACCTCCTGGTAGCCAGGAGATACAGGATTTGAAGGTAGCAGCAGCATGTGGATCTTCTGATGGTGATGATGGAAGCAGCAACATTCCGGCAAAAACAGTTAATAAGTTGTTTTCAACTACCAAAGCTTCTAAGTCCAAACGCAGAGGGAAGTCTAAAAAGGGAACCAATTACAAGTATAATCCTACAGAGAAAATAGCCTAA 2046 0.4125 MPLPVAKLKASDTPDVTRTEDGIDTIIRQAIGKEPLFYFPRGGDSPGQLIQLLNTFDQHEYPGWPLLYPLKAPSEKCEKCSKEFCSTINYRRHSPVHHRFRKLDKDTSKTRDLLGAYWDKLSVEEAKEVLSLENVMLEEVPGSTVLDALITLNQKQGCFLLPQCYMRAGVALLDILQSKPSSLPIPSRELFSILDDASERTFLLGTSVSMQKHVFQGGSGKIGLQPKNIVACISFLLEQILVKAWLADKDAEALRCQKQLVEEEEAAQKRQAEILKRKRQKKLRQKEQRAREQRLKLEEETKENVDSTLKTLSPAECFLDAYDFEAQNPEEFTNNTPSHVPFQFPDVNEEKDGDTRSGLAFGSDQIIGQSEHGLDQPCRAVARWQELPKSPQRTVVSDLHTNKNPPILNPDEVIQSYGTRNDQRADAIVNAGKACNRKPTPEIDRMVLKTIAKTEPDPVNHEVLIGSISVNLGKCSQSEGNVVVSRDCSVENVDNKNNSQDKPKKPDLVKSGNNQATVKTSTPVSQFETKDSFPVQSHGTKVDAGSRDEGCQNSSRLASDGNDVGFKMKISNLEGHLDPGKFQFNIQAAKAFLAQRWEEAISSHHVKLVISLDSEPPGSQEIQDLKVAAACGSSDGDDGSSNIPAKTVNKLFSTTKASKSKRRGKSKKGTNYKYNPTEKIA 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01345 681 ProSitePatterns Zinc finger C2H2 type domain signature. 77 98 IPR013087 -
Trre12g01345 681 MobiDBLite consensus disorder prediction 653 681 - -
Trre12g01345 681 MobiDBLite consensus disorder prediction 510 536 - -
Trre12g01345 681 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Trre12g01345 681 MobiDBLite consensus disorder prediction 277 304 - -
Trre12g01345 681 Coils Coil 251 303 - -
Trre12g01345 681 MobiDBLite consensus disorder prediction 491 558 - -
Trre12g01345 681 MobiDBLite consensus disorder prediction 286 304 - -
Trre12g01345 681 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01345 Trre-Chr12 13414165 13425776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01345 21 680 C2H2 Transcription Factor Family AT4G25610 38.806 4.62e-119 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01345 - - tpra:123909032 950.273