Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01342 ATGGCAACACAGTCCGAATGTCTCGGATATGAATTTGCCAAGTGGTTGGGAGTCCAAACGCCACAGGCTAGAGTCATTCACAATACCAATTCAGAATGGCTCCAAATAAAAGAAGCTGCAGAAAAAGCAAGGGATGCAGCAAGTTTTGAGCGTGATGCAATTGGTGAAACAACATGTTCAGAGCTTTTGAAAGCACTTGAGCTTAGTCGGTGTCTCTTGTTTATGAGAATGGACGAGATGATGCGTGGTCAAAGAGGATGGAGGGAGTTATCAATCTTGGGAGATAAAATGAACATGTTTAGTGGGATGATAGAAGGGTTGATTTGGTCTCCACAAAGCAACAACGTTAATATGAAAAATATATATTTTAATAAAGCAAAATAG 384 0.401 MATQSECLGYEFAKWLGVQTPQARVIHNTNSEWLQIKEAAEKARDAASFERDAIGETTCSELLKALELSRCLLFMRMDEMMRGQRGWRELSILGDKMNMFSGMIEGLIWSPQSNNVNMKNIYFNKAK 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01342 127 Pfam Actin-fragmin kinase, catalytic 3 95 IPR015275 -
Trre12g01342 127 SUPERFAMILY Protein kinase-like (PK-like) 1 77 IPR011009 -
Trre12g01342 127 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 1 76 IPR035010 GO:0004721|GO:0009737|GO:0043622
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01342 Trre-Chr12 13387749 13388920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01342 1 75 Protein tyrosine phosphatase (PTP) family AT5G23720 73.333 5.80e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01342 K14165 - jre:109000311 129.028