Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01341 ATGGCAACACAGTCCGAATGTCTCGGATATGAATTTGCCAAGTGGTTGGGAGTCCAAACGCCACAGGCTAGAGTCATTCACAATACCAATTCAGAATGGCTCCAAATAAAAGAAGCTGCAGAAAAAGCAAGGGATGCAGCAAGTTTTGAGCGTGATGCAATTGGTGAAACAACATGTTCAGAGCTTTTGAAAGCACTTGAGCTTAGTCGGTGTCTCTTGTTTATGAGAATGGACGAGATGATGCGTGGTCAAAGAGGATGGAGGGAGTTATCAATCTTGGGAGATAAAATGAACATGTTTAGTGGGATGATAGAAGGGTTGATTTGGTCTCCACAAAGCAACAACGAATTTGATAAGCAAGTTCCACTGATGGATGAGATTGATACAAAGAAATAG 396 0.4192 MATQSECLGYEFAKWLGVQTPQARVIHNTNSEWLQIKEAAEKARDAASFERDAIGETTCSELLKALELSRCLLFMRMDEMMRGQRGWRELSILGDKMNMFSGMIEGLIWSPQSNNEFDKQVPLMDEIDTKK 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01341 131 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 1 76 IPR035010 GO:0004721|GO:0009737|GO:0043622
Trre12g01341 131 Pfam Actin-fragmin kinase, catalytic 3 95 IPR015275 -
Trre12g01341 131 SUPERFAMILY Protein kinase-like (PK-like) 1 77 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01341 Trre-Chr12 13387749 13389177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01341 1 75 Protein tyrosine phosphatase (PTP) family AT5G23720 73.333 7.65e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01341 K14165 - jre:109000311 129.028