Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01316 ATGGGAAAAACACAATGTTGTGATGAACATGTAGTGAAAAGAGGAGCTTGGACACCTGAAGAAGATGAAACATTAGTTGAGTATATTAACAAGCATGGACATGGAAGTTGGAGAACACTTCCAAAACTAGCAGGTCTCCTTCGATGCGGAAAAAGTTGCCGGCTTCGGTGGATAAATTATCTTCGTCCTGACATTAAACGTGGACCATTTACGACCGATGAAGAAAACAGAATTATTCAGCTTCAAACAACGCTCGGCAACAGGTGGGCTGCTATAGCATCCCAAATTCCAGGACGAACAGACAATGAAATAAAGAACTACTGGAACACACAACTGAAGAAGCGCATCGCTCGGTCAGGAAATTCACTAGCGACACAACAGCATCACTATCTCAGTTCCGATCATATTGTTGTCAAGCCGGAATCTCCTTCGAAACAACACACGATGAAATGGGGAAGTGACATAATTGAAGCTGAGGCAAAGTTGTCAATGGAATCATCATTGGTTAATAATTCATTGCCAACAAGTGAAACACATTCTGATTACTTTCTTCAACTTTGGAATTCTGAGGTTGGAAAATCATTTAGAATGATCAAAGGAAAAGAGATAATGTGTCAAAGCACTGTCTCAGAGGCATCATCATCCTCAAAATTGGAGTCATGTTCAAACAATGGTAGCAGTGCCTTGGTAAACAAGTCACAAGAAGAACAAGGTTGTGATTGTGACTATAAACCAAAACTTGAAGATGGCATAACAGGTTCAGAGTCAGGCTATTATGAATTTCTTGATTCTTATGATTCTGCGCTAAATCGCCTTCTAGACGATGAAATAGGATTCTCAGCACAAAATGAAAGTTTTCTCAATACACTTTTTGGCAGATGTGACTAA 888 0.3975 MGKTQCCDEHVVKRGAWTPEEDETLVEYINKHGHGSWRTLPKLAGLLRCGKSCRLRWINYLRPDIKRGPFTTDEENRIIQLQTTLGNRWAAIASQIPGRTDNEIKNYWNTQLKKRIARSGNSLATQQHHYLSSDHIVVKPESPSKQHTMKWGSDIIEAEAKLSMESSLVNNSLPTSETHSDYFLQLWNSEVGKSFRMIKGKEIMCQSTVSEASSSSKLESCSNNGSSALVNKSQEEQGCDCDYKPKLEDGITGSESGYYEFLDSYDSALNRLLDDEIGFSAQNESFLNTLFGRCD 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01316 295 FunFam Myb transcription factor 11 67 - -
Trre12g01316 295 SMART sant 66 114 IPR001005 -
Trre12g01316 295 SMART sant 13 63 IPR001005 -
Trre12g01316 295 CDD SANT 16 61 IPR001005 -
Trre12g01316 295 CDD SANT 69 110 IPR001005 -
Trre12g01316 295 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre12g01316 295 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre12g01316 295 Gene3D - 11 67 - -
Trre12g01316 295 Gene3D - 68 135 - -
Trre12g01316 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre12g01316 295 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre12g01316 295 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre12g01316 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre12g01316 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 227 - -
Trre12g01316 295 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01316 Trre-Chr12 13170540 13172863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01316 1 287 MYB Transcription Factor Family AT3G61250 52.218 1.82e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g01316 Myb_DNA-binding 6.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01316 K09422 - gmx:100807142 353.214