Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01310 ATGGGTGTCAAGAATTTATGGGACATCCTCGAATCTTGCAAGAAAACGGTTCCTCTTCACAATCTCCAGAACAAAAGGGTATGTGTGGATCTATCTTGTTGGATGGTTCAGCTTCAGAATGTGAGTAAATCTCATGCTTGTTTGAAAGAGAAAGTTCATCTTAGAGGACTCTTTCATCGTCTTAGAGCTCTCATTGCTCTTAATTGCACTGTTGTTTTTGTTTCAGATGGATCAATTCCTGCCATTAAATTATCGACTTATAGGCGTCGCTTAAATAATGGAAAGGAGGTAGCCCAAAATGAAACTAACTTACAAAAAGTGACATCGTTACGAAGAAACATGGGGTCTGAGTTTTCATGCATGATTAAAGAGGCTAAAGTCTTAGGGATGGCTCTTGGCATCTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCGCAGTGTGCTTTGTTGAACTCTGAATCATTATGTGATGGATGTTTCAGTTCAGATTCAGATATATTTCTCTTCGGTGCAAGGACAGTGTACAGAGATATCTGCCTCGGAGATGGCGGATATGTTGTATGTTATGAGATGGCAGACATCGAAAGAAAACTTGGATTTGGACGGGACTCATTGATTGCTCTCTCCTTGCTTCTCGGCAGTGACTATTATCCAGGAGTTCATGGTTTAGGTCCGGAGTCAGCTTGTCAGATAGTCAAATCAATCGGGGACAAATTTATTCTTAAAAAATTTGCATATGAAGGACTTGGATGGGTGAAAAAAAGAAAAGGAGCTGAAAATAATATAGGAAGGGATGATACCATTATGGAAGTGATTAATGCTTATTTGAAGCCAAAATGCCATTCAGCAGATTCAGATGTTGTGCTCAGGGCTCTTGCTCAGTACCCATTTGAACGTATTAAACTCCAGCAGATATGCGCTGAATTCTTTGAATGGCCTTCAGAGAGAACAGATGGGTATATCCTTCCTGGTATAGCAGAAAGAGATTTACGACGATTTGCTAATTTGCGATTAACTTCATCTGAACTTGGCTTGAACCTTCCTTTGCATGAGATTCCTGTGAAGTGTCCTGTGTCAGAAATTATTAAGAGCCGAAGAGCTCAAGGGCGAGAATGCTATGAGGTTTCTTGGAAAGACATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGTGCTTGTCCGGAGAAGATTTCGGAATTTGAGGAGAAAAAAGCACTGCGGAAGAAACAAAATGTTCGAAAAAGAAGACCAAAGAAAAATAAAACTATGCCTTCTTTGGCTGAGCTTGATCTAACACTTCAGAATCTGTTGTTGGACAATAATTTGGAAGACGAAACCAACGACAATGTCTCTGAATCTGATTCTTCAGGAAGGATATTAGGAGAGATAACTGCTATGGCCAAATCTGATCTAAACACAGAAAACTTGATGCTGTCACGCGATGATGACATTGAAAATAATGATTGGATTCGGAATATCAGCAATGTAACAAACAATGAAGGTGTTTCTAGTATGGATAAAAATGTGGTCATAGATCTTTTGAGCCCTACTCCAATTAAGCCGTCAAACAATTCTTCGAAATTTCATCGATCAAGTGACCAAAATATTGAAGTGATTAATTTGAGTGATTCAGAAAATGAGGTGTCACCTGAACACAAGGAGAAAGCTAAAGAACTGAGATTGTTCTTAGCAAGTATTAGAAATGAAATCCATTGA 1728 0.3895 MGVKNLWDILESCKKTVPLHNLQNKRVCVDLSCWMVQLQNVSKSHACLKEKVHLRGLFHRLRALIALNCTVVFVSDGSIPAIKLSTYRRRLNNGKEVAQNETNLQKVTSLRRNMGSEFSCMIKEAKVLGMALGISCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMADIERKLGFGRDSLIALSLLLGSDYYPGVHGLGPESACQIVKSIGDKFILKKFAYEGLGWVKKRKGAENNIGRDDTIMEVINAYLKPKCHSADSDVVLRALAQYPFERIKLQQICAEFFEWPSERTDGYILPGIAERDLRRFANLRLTSSELGLNLPLHEIPVKCPVSEIIKSRRAQGRECYEVSWKDMDGLETSIVPADLIESACPEKISEFEEKKALRKKQNVRKRRPKKNKTMPSLAELDLTLQNLLLDNNLEDETNDNVSESDSSGRILGEITAMAKSDLNTENLMLSRDDDIENNDWIRNISNVTNNEGVSSMDKNVVIDLLSPTPIKPSNNSSKFHRSSDQNIEVINLSDSENEVSPEHKEKAKELRLFLASIRNEIH 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01310 575 Gene3D - 201 263 - -
Trre12g01310 575 ProSiteProfiles Chromo and chromo shadow domain profile. 356 416 IPR000953 -
Trre12g01310 575 SMART xpgn3 1 97 IPR006085 GO:0004518
Trre12g01310 575 CDD CD_CSD 358 406 - -
Trre12g01310 575 Pfam XPG N-terminal domain 1 92 IPR006085 GO:0004518
Trre12g01310 575 FunFam flap endonuclease GEN-like 2 2 199 - -
Trre12g01310 575 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 547 IPR006084 -
Trre12g01310 575 SUPERFAMILY Chromo domain-like 357 412 IPR016197 -
Trre12g01310 575 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Trre12g01310 575 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Trre12g01310 575 Gene3D - 355 423 - -
Trre12g01310 575 FunFam Flap endonuclease GEN-like 1 200 257 - -
Trre12g01310 575 SMART chromo_7 355 409 IPR000953 -
Trre12g01310 575 CDD H3TH_XPG-like 203 244 - -
Trre12g01310 575 CDD PIN_GEN1 2 198 - -
Trre12g01310 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Trre12g01310 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Trre12g01310 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Trre12g01310 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Trre12g01310 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Trre12g01310 575 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Trre12g01310 575 Gene3D - 2 199 - -
Trre12g01310 575 SMART xpgineu 130 200 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01310 Trre-Chr12 13038719 13045136 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01310 1 236 Core DNA Replication Machinery Family AT5G26680 25.194 1.22e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01310 K15338 - gmx:100806919 894.034