Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01308 ATGGGATTCCAGGTGGCAGAAAAACCAAAACCAAAATATAGAAAGGGATTATGGTCCCCTGAAGAAGATAATAAGCTCAGAAATTATATCCTTAAGTATGGTCATAGCTGCTGGAGTTCTGTTCCCATTAAGGCAGCCTTGCAAAGGAGTGGAAAGAGTTGCAGGCTAAGATGGATTAACTATCTTAGACCAGGATTAAAGAGAGGTATGCTTAGCAAACATGAGGAAGATACAATCATGACCCTTCACCACATGTTAGGCAACAAGTGGTCTCAAATAGCACAACAATTACCGGGAAGAACAGATAATGAGATAAAAAATAATTGGCATTCATATTTGAAAAAGAAAGTGATCAATGCTAAGGAAATAATTGAATCTCATAATCAAATTCAATATGCTAGCTCAAGTTCAGATACAATGGACTCTATACTCTCTACAAAAAAATGTGCAATTCAAGATCCTAACTATATGTTGTTAGAAAACATTGATAAATCAACAGCTGCAGCAGCACACTCTGATCAATCTATTTCTCAAAATTATAACACTGCCAATGAAGTTTGTCAGAGCTCATTACCAAAACTTTTATTTGCTGAGTGGCTTTCATTGGATCATGTAAATGGTGGAAAATCTTTAAATTCAGATGGTTCAATGGTCTTGGGAAATGGATTTGATCAAAACTCAATTTTTCAAGAAAATGTTGTGCAAATGCCAGAAGGACAATTTGGTGAAGAGTATCATGATAGTTTAATTCAGAATCTTGAGAATGAGGTTTACTATTCACAGCTTCAAATATCAAATCAAGTGGATGAAAATGAATTGGTCCATTATATGAACAATGATGGAAGGTATGTATGA 855 0.3485 MGFQVAEKPKPKYRKGLWSPEEDNKLRNYILKYGHSCWSSVPIKAALQRSGKSCRLRWINYLRPGLKRGMLSKHEEDTIMTLHHMLGNKWSQIAQQLPGRTDNEIKNNWHSYLKKKVINAKEIIESHNQIQYASSSSDTMDSILSTKKCAIQDPNYMLLENIDKSTAAAAHSDQSISQNYNTANEVCQSSLPKLLFAEWLSLDHVNGGKSLNSDGSMVLGNGFDQNSIFQENVVQMPEGQFGEEYHDSLIQNLENEVYYSQLQISNQVDENELVHYMNNDGRYV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01308 284 CDD SANT 18 62 IPR001005 -
Trre12g01308 284 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre12g01308 284 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Trre12g01308 284 Gene3D - 15 67 - -
Trre12g01308 284 CDD SANT 72 113 IPR001005 -
Trre12g01308 284 PANTHER MYB DOMAIN PROTEIN 55 6 226 - -
Trre12g01308 284 Gene3D - 71 141 - -
Trre12g01308 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Trre12g01308 284 FunFam MYB transcription factor 70 142 - -
Trre12g01308 284 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trre12g01308 284 Pfam Myb-like DNA-binding domain 72 113 IPR001005 -
Trre12g01308 284 SMART sant 14 64 IPR001005 -
Trre12g01308 284 SMART sant 67 115 IPR001005 -
Trre12g01308 284 FunFam MYB transcription factor 12 68 - -
Trre12g01308 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Trre12g01308 284 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01308 Trre-Chr12 13008862 13013078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01308 6 201 MYB Transcription Factor Family AT5G52260 50.244 4.11e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g01308 Myb_DNA-binding 7.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01308 K09422 - gmx:100803537 389.423