Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01294 ATGCTTAATTTTCACTTCAAACACTTCAACTTCACTTCCCTCACAACTCTAATTCCATTCCTTCTCCTTCTATTCATAAACCATGTTGAATCACAAGGATCCATGCAACCGGTTCCTACCGATATCTCTACGCATAGATGGCAACCTTCTCTTGCCATCACAGGAGGTGCCTTACTTTGTCTACTTCTATTCTTAGGAATCATCTTTTGTTATGTCCGGAATTGCGTCGAATCACGCATCATAGTCAGAGATTGTCCATGTTCATGTTCACAAGGTATCAACAAAGAACTCCTCAACACTTTCCCTATCCTCTTTTTCTCAACAATCAAGGATCTTAAAACAGATCAAGGACCATTGGAATGTGCAGTTTGTTTAATAGATTTCAAAGAAAATGATACCTTAAGATTACTACCTAAATGCAACCATGTTTTCCACCCTCAATGCATTGATTCATGGCTAGCTTCACATGTCACATGTCCGGTTTGTCGGGCAAATCTTAACCAAGATTCTTGTCAAGTTGCAGTGATCATTCCAACTCATTTCAACAATGACCAAACATGTGAACAAAGTCCTGAAACCGTGCCCGAAATCACTCTAAAAACCGTACCTGAAATCACTCAAAATAATGATTCCAATGACCAAAACCAAAACCCGAACCAAATTGGCGATGAAATGAACAAAGGAGAAAGTATCAATTGTGATGATAGGCATGCATCAAAATTGAAACTTTCAAGGTCAAATTCAACCGGACATTCATTGGTTGAACAAGTAACATGTATGGAGAGACACACACTAATGTTACCAGAGGATGTTAGAAGGTACATTTTGGTTAACCATAGAAAAAGTTTTCAACTTTCTATGAACAACAACATGGTTAAAGGGTTATGTTGGAGTGATAGTGAAGAGAGCAGTGTAGGGAAGAAAATCAATAGTGATGCAAAGGAAAATCTTAACAAAGTGAAGAATGGTGATGTTAAGGTTAATTCAATAAATGGGTCGTTGTTGAATTTTGATGGGGTTATGGGAAATTTTTGGTATATGAATGATGAAGCAGAGAAGGTTGAAATGGAAGAAAAGTAA 1080 0.3741 MLNFHFKHFNFTSLTTLIPFLLLLFINHVESQGSMQPVPTDISTHRWQPSLAITGGALLCLLLFLGIIFCYVRNCVESRIIVRDCPCSCSQGINKELLNTFPILFFSTIKDLKTDQGPLECAVCLIDFKENDTLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLNQDSCQVAVIIPTHFNNDQTCEQSPETVPEITLKTVPEITQNNDSNDQNQNPNQIGDEMNKGESINCDDRHASKLKLSRSNSTGHSLVEQVTCMERHTLMLPEDVRRYILVNHRKSFQLSMNNNMVKGLCWSDSEESSVGKKINSDAKENLNKVKNGDVKVNSINGSLLNFDGVMGNFWYMNDEAEKVEMEEK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01294 359 CDD RING-H2_EL5-like 120 163 - -
Trre12g01294 359 SMART ring_2 121 162 IPR001841 -
Trre12g01294 359 MobiDBLite consensus disorder prediction 206 232 - -
Trre12g01294 359 FunFam E3 ubiquitin-protein ligase ATL6 83 169 - -
Trre12g01294 359 SUPERFAMILY RING/U-box 120 169 - -
Trre12g01294 359 MobiDBLite consensus disorder prediction 206 226 - -
Trre12g01294 359 Pfam Ring finger domain 120 163 IPR001841 -
Trre12g01294 359 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Trre12g01294 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 172 IPR013083 -
Trre12g01294 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 37 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01294 Trre-Chr12 12905485 12906665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01294 13 310 Rapid Response to Elicitors AT3G05200 32.911 1.97e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01294 K10664 - gmx:100809056 271.552