Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01285 ATGGCTCCGCCGCCACCACCGGTGGAAAACAACGCCGAATCCACCACAACCGTCACAACCACCCCTATCTTAGAGTCTCAGAGATCTATTCCTACACCGTTTCTCATCAAAACCTATAACCTCGTTGAAGATAAATCAATCGACGATGTTATCTCATGGAATGAAGATGGATCCACCTTCATCGTTTGGAACCCTACCGTTTTCGCTAGCAATTTGCTTCCAAAACATTTCAAACACAATAATTTCTCCAGCTTCGTTCGTCAACTCAATACTTATGGATTTAGAAAAGTAGTACCTGATCGGTGGGAATTTTCAAACGATTGTTTCCGAAGAGGAGAAAAACGACTTTTATGCGAGATTCAACGGCGGAAGATCTGTTCTCCGGCTGTTTCACCGTCGCCGGCGGCTGTTTCTGTTTCTGCTACTGCAACGGTGGAAATAAACACTGCGATAGTTTCGGTTCCTTCACCGATGCCGATTACTGTTATACCGATGGCGATGCCGATGGTTTCACCGTCAAACTCCGGTGAAGAACAAGTGATATCGTCGAGTTCGTCTCCGCCGCGTGCGCCGGCAGAGCTTCTCGACGAGAACGAGAGATTGAGAAAAGAGAACGTTCTGTTGAATAAGGAACTTGCTGAGATGAGATCGCTTTGTAACAATATATACACTCTCATGTCAAGTTATGCAAACAATAGCAACAACGGAAATAATCAATCGGACGGTGGAGCGCAAGGGAGTAGAGAATCCGGTATGACGGCGGTGAAACCGTTGGATTTGTTACCGGCGGAGGTAAAACGGAGCTCCGGCGTTGAAATGAATCCAAAGCTATTCGGTGTTACGATTGGAACGAAGCGAATTAGAGAAAACGGTTGTGAAAATGGTGAAAAAGGAGAAGATACACTGTTACGGTTACATCAACCAGTTACTACGGACGTGAAATCTGAGCCGTTAGATTGTCAAGAACAACGCGATAATGATGAAACATGA 990 0.4545 MAPPPPPVENNAESTTTVTTTPILESQRSIPTPFLIKTYNLVEDKSIDDVISWNEDGSTFIVWNPTVFASNLLPKHFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKRLLCEIQRRKICSPAVSPSPAAVSVSATATVEINTAIVSVPSPMPITVIPMAMPMVSPSNSGEEQVISSSSSPPRAPAELLDENERLRKENVLLNKELAEMRSLCNNIYTLMSSYANNSNNGNNQSDGGAQGSRESGMTAVKPLDLLPAEVKRSSGVEMNPKLFGVTIGTKRIRENGCENGEKGEDTLLRLHQPVTTDVKSEPLDCQEQRDNDET 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01285 329 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre12g01285 329 SUPERFAMILY "Winged helix" DNA-binding domain 31 123 IPR036390 -
Trre12g01285 329 MobiDBLite consensus disorder prediction 309 329 - -
Trre12g01285 329 Coils Coil 198 218 - -
Trre12g01285 329 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre12g01285 329 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre12g01285 329 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre12g01285 329 MobiDBLite consensus disorder prediction 172 189 - -
Trre12g01285 329 FunFam Heat stress transcription factor B-4 26 124 - -
Trre12g01285 329 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 231 IPR027725 -
Trre12g01285 329 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre12g01285 329 Gene3D - 26 124 IPR036388 -
Trre12g01285 329 MobiDBLite consensus disorder prediction 171 197 - -
Trre12g01285 329 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01285 Trre-Chr12 12794841 12795932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01285 26 293 HSF AT5G62020 51.916 1.52e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre12g01285 HSF_DNA-bind 7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01285 K09419 - gmx:100812267 379.022