Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01284 ATGGTTCGTTCACCGAGTCACAATGTCGCGAAAAGCACAAGAAGGATTAGAGTTGTCCATGATGACCATGATGCAACTGATTCATCATCAGATGAAGAAAGTTATTCTTTTGAGAAAGAACAAAGGAAGAGGAAGAGAGTTGTGCTTGAACTTTCAGTCCCTAATGTTTTAGATGACATTGTTAATGTCGATAAAACAATATTGGTCGATAATGATAATGGATTGAACAAGAGTTTAACGAAAGAACAATCTCGTATCAAATATACCGGTGTTCGAATGAGGAAATCGGGAAGATGGTCTGCAGAGATTCGCAACCCGATTAAAGGTAAGCGCGATTGGTTAGGAACTTTCGACACAGCAGAAGAGGCTTCAAAAGCTTATGAAGCTAAAAAACTTGAATTCGAAGCCATGACTAAGGGGAAGAATAGTGCATTCAACAATGTTGTTACTATTCAAGCTATGGTTGCTATTTTGAATGGGACAAAGAGTGATACGGCAAATATATCTTCATCTTTGCCACAATGGGTTAATTGTGTTTCCAATTTAATTGAGAGTGGTAAGATTTCAAGTGATGAACCTATTCTTGAGTGTGTTAAGACTAATCCTTTGGGGGGTGAATTTCAGGAACAAAATTTGCTAGATTTATGTCCTTTGGACATGGTGCGAAAACCGGATGTCGTTGCATCATCCAATTTTTCTACATATTTGCTAGTACAATTGACATGGTTAACATTTGATTATTTGGGGCAGCGCTTGAAATCTTTGGATGATCTTGGTTGTCTTGATGACCTTACGTTTTGTGATTAA 807 0.3767 MVRSPSHNVAKSTRRIRVVHDDHDATDSSSDEESYSFEKEQRKRKRVVLELSVPNVLDDIVNVDKTILVDNDNGLNKSLTKEQSRIKYTGVRMRKSGRWSAEIRNPIKGKRDWLGTFDTAEEASKAYEAKKLEFEAMTKGKNSAFNNVVTIQAMVAILNGTKSDTANISSSLPQWVNCVSNLIESGKISSDEPILECVKTNPLGGEFQEQNLLDLCPLDMVRKPDVVASSNFSTYLLVQLTWLTFDYLGQRLKSLDDLGCLDDLTFCD 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01284 268 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Trre12g01284 268 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Trre12g01284 268 ProSiteProfiles AP2/ERF domain profile. 87 144 IPR001471 GO:0003700|GO:0006355
Trre12g01284 268 SMART rav1_2 87 147 IPR001471 GO:0003700|GO:0006355
Trre12g01284 268 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 138 - -
Trre12g01284 268 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Trre12g01284 268 SUPERFAMILY DNA-binding domain 87 134 IPR016177 GO:0003677
Trre12g01284 268 CDD AP2 87 146 IPR001471 GO:0003700|GO:0006355
Trre12g01284 268 MobiDBLite consensus disorder prediction 14 39 - -
Trre12g01284 268 MobiDBLite consensus disorder prediction 1 39 - -
Trre12g01284 268 Gene3D AP2/ERF domain 86 147 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01284 Trre-Chr12 12766416 12767353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01284 14 264 AP2-EREBP Transcription Factor Family AT1G68550 34.586 7.17e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre12g01284 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01284 - - tpra:123904815 354.755