Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01274 ATGATCATACGCGGCAGTTGTGAGGAAAAGCAGCTTAGAGCTGAGAATGCCCGACTAAAGAAACAATTGGCTCATGTGTATGCCTTAGCTGCTATAGATGAACTCATCCAGATGGCTGAACCAGACTTCGATCTATGGATCAAGAGTTCGGAGAGTGGGAAGGAAGAGTTTAACCACGACAAGTATGAAAGGATTCGTTTTCCTTTTAATACTCTAAAACCATATTGTTTGGTAGCCGAAACTACAAGAGAGAGTGTGCTATTATGCATCAACGCTGCTGCACTCATAGAAACATTCATGGATGCGGATTGGTGGGCGGAGATGTTTCCGTGTATGATTGTTGAAGCCGAAACCTTGGATGTATTTTTTAATGGAATTGATGGAACCCAAAATAGATCTATACAATTAGTATGTTTATGA 420 0.4095 MIIRGSCEEKQLRAENARLKKQLAHVYALAAIDELIQMAEPDFDLWIKSSESGKEEFNHDKYERIRFPFNTLKPYCLVAETTRESVLLCINAAALIETFMDADWWAEMFPCMIVEAETLDVFFNGIDGTQNRSIQLVCL 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01274 139 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 137 IPR042160 -
Trre12g01274 139 ProSiteProfiles START domain profile. 17 120 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01274 Trre-Chr12 12724398 12724958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01274 8 137 Homeobox Transcription Factor Family AT4G00730 38.462 2.29e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01274 K09338 - tpra:123905936 136.732