Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01273 ATGGCACCAACCATATGCAGATGCAGAAGTTGTGAGGAATGGCAGCTTAGAGTTGAGAATGCTCGACTGAAGAATGAATTGGCTCGAGTGTCTGCCTTAGCTGCTATGGATGAAGTCATCAGGATAGTTGAACCAGACTCTGATGTCTGGATCAAGAATCCGGAGAGTGGTAAGGAAGAGTTTAACCATGTCGCGTATGAAAGGATTCGTTCTCCTTTTAATACTCCAAGACCAAATGGTTTTGTTACTGAAGCTACAAGAGAAACTCTGCTGTTATGCACCAACAGTGCTGCACTCGTTGAAACATTCTTGGATGCGGACCGTTGGGCGGAGATGTTTCCGTGTATGATTGTTGAAGCTGAAACCTTGGATGTATTTTCTAATGGAATTGATGGAATAAATGGATCTATTCAACTGATGCATGCTGAGATTCAATTGCCTTCTCCGTTGGTTCCGGTTCGAGAATATAATTTCATTAGGTTTTGCAAGCAGCATGCTGAAGGTAAGTGGGCTGTAGTTGATGTTTCGTTCGACTATGGTCGTAATGGTCCCAACGGAAACCCTAACATCAGCTGCAAGAAGCTTCCGTCTGGCTGTATTTTGCAGGACATGCCCAATGGTTTTTGTAAGATTACATGGGTGGATCATTCTCAATATGATGAGAGTGCTGTCCACCAAATCTATCAACCATTGGTTAACTCCGGCATCGCATTTGGTGCTTATAGATGGCTTGCAACTCTCCAGAGGCATTGTGAATCCCGTGCCATCCTCATGTCTGCCGTACTGTCTGCTGACCCTGAAGTCGTATGCCCAATTGGCAAGAGAATCATGTCAAAGCTCGCGCGGCAGATGTCCGATTACTTATGGTCTGGAATTTGTCCTTCGTCGGATAGCGGCTGGGACATCCTTCTCACTACTGACATGGGCAACAGCGACCTGATAATAACGTCCCAAGAAATTCAGGATGCCTATGGTGCAAATCCTAGCATCATATTAAGTGCTTCCACTTCTGTTTGGATGCCGGTCTCGCGGCAACGGGTGTTTGATTTCCTCCGTGATGCACGAAGGAGAAGTGAGTGGGATGTTTTGTCCAATGGTGGATCAATGGAGGAGATGGTCCGCGTTGCTACAGGAGAAGGGATTGGAAATTCAGTTTCTATACTTCGTGGTCATAATGCTGCAAATGGAATATATCTACAAGATTCATGGACGGATAGTTCTTGCTCGATGGTCGTGTACTCTCCGATCAGCATGCAATCCTTGGACATGCTGATGGATGGCGGAGATTCTTCATTTGTTGCTCTGTTGCCTTCCGGCTTTTCAATTCTTCCGGATGGCTATTCAAATAGCAACACCGGTACTTCAAGTGACGATAGTGGCAGCAGTGACAACGACAACAACGGATGCTTGCTCACAGTTGGATTTCAAATGTTGCTGACAAATGAATCATTTGATACCATTTATGAACTCATGTCACACACCATTGAGAAGATCAAAGATGCTCTTGAAGTTGAATGA 1518 0.4513 MAPTICRCRSCEEWQLRVENARLKNELARVSALAAMDEVIRIVEPDSDVWIKNPESGKEEFNHVAYERIRSPFNTPRPNGFVTEATRETLLLCTNSAALVETFLDADRWAEMFPCMIVEAETLDVFSNGIDGINGSIQLMHAEIQLPSPLVPVREYNFIRFCKQHAEGKWAVVDVSFDYGRNGPNGNPNISCKKLPSGCILQDMPNGFCKITWVDHSQYDESAVHQIYQPLVNSGIAFGAYRWLATLQRHCESRAILMSAVLSADPEVVCPIGKRIMSKLARQMSDYLWSGICPSSDSGWDILLTTDMGNSDLIITSQEIQDAYGANPSIILSASTSVWMPVSRQRVFDFLRDARRRSEWDVLSNGGSMEEMVRVATGEGIGNSVSILRGHNAANGIYLQDSWTDSSCSMVVYSPISMQSLDMLMDGGDSSFVALLPSGFSILPDGYSNSNTGTSSDDSGSSDNDNNGCLLTVGFQMLLTNESFDTIYELMSHTIEKIKDALEVE 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01273 505 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 502 IPR042160 -
Trre12g01273 505 SMART START_1 30 253 IPR002913 GO:0008289
Trre12g01273 505 Pfam START domain 33 253 IPR002913 GO:0008289
Trre12g01273 505 CDD START_ArGLABRA2_like 28 252 - -
Trre12g01273 505 ProSiteProfiles START domain profile. 21 256 IPR002913 GO:0008289
Trre12g01273 505 SUPERFAMILY Bet v1-like 33 253 - -
Trre12g01273 505 Gene3D - 33 259 IPR023393 -
Trre12g01273 505 SUPERFAMILY Bet v1-like 271 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01273 Trre-Chr12 12717562 12720702 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01273 32 505 Homeobox Transcription Factor Family AT3G61150 45.010 5.47e-149 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01273 K09338 - gmx:100785102 524.628