Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01269 ATGGATCCAAATGGTGCAAGTGGTTCAAATGGTGCTAATGGTGCAAATCGTGTTAATGGTCCTAATGGTGAGATGAGACTACCTGGAGAAAATTTTGATGCTAGTGTGATGGGTAGGATGAGGGAGGATGATTTCGATAGCAGGTCAGGAAGTGAAAATTTCGATGCTTCCGGTGATGAAGCTGGTGATGATCAACAACAAAATAAGCGAAAAAAGAAGTATCATCGCCATACTCCTCAACAAATTCAAGAGCTCGAAAATTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAGCTGATCTTAGCCGGAAACTTAGCTTGGACAACAAGCAAGTTAAATTCTGGTTCCAGAATAAACGAACGCAAATGAAGACACAACTGGAACGCCATGAGAACATGCTTCTTAGGCAGGAAAACGAGAAGCTGCGAGCTGAAAACAGTATGCTGAAGGAGGCTCTAGCAAATCCAATTTGCAACAACTGTGGTGGCCCGGGAATTACTGGACAAATTTCAATGGATGATCATCAGCTTAGAATTGAGAATGCTCGACTGAAGGAGGAGTTGTCCCGACTGACTGCCTTAACCCAGTACCTCGGCCGACCAGTCTCTGCATTGACTGCAATGTCTATGCAGAATCCGAATTTAGGTCTTGAATTCGGTATGGGAAGGAATGGAATTGCTGGTCCGAGCAATTACAACATGCAGCTGCCAATGGGATTTGTTATGGGAGATGGTGTTATGGGAGCTGCACCGGCAAATTCTGGAATGCAACCACCGATGGGAATGATTGGAAATGATCCCCAGCAGGAGAGATCTATGCTTGTCGATCTCGCATTAGCTGCGATGAATGAACTCATCAGACTGTGCGAACCTGAATCCCCCCTCTGGATTAAGAGTCCAGACACCGGGAAGGATGTTCTTAACCATGAAGAGTATGCGAGGATTGGTTCTCCTTTCAACACTCCGTTACCAAATGGTTATACAACTGAAGCTACAAGAGAAACCGGGCTGTTATACACCAACAGTGCGGCTCTCGTGGAAACTTTCCTAGACGCGGACCGGTGGTCGGAGATGTTTCCATGTATGATTGCTCAAGCTGCAACCATGGATGTTTTATCCAATGGAATGGGTGGAACCAGAAATGGAGCTATGCAAGTGATGCAAGCTGAGGTTCAATTACCTTCTCCATTTGTCCCGGTTCGACAATATCGTTTCCTCAGATTCTGCAAGCAGCATGGTGAAGGTATTTGGGCCCTGGTTGACGTTTCGGTCGACCTTGGTCGTAATGGTCCAAACAGCATCCCTTACATGAGCTCTAAGAAGCTTCCATCTGGCTGCATTTTGCAGGACGTGGATGGCTTGTGCAAGATAACTTGGGTGGATCATACTCAATATGACGAGAGTGCTGTCCACCAAACCTATCGCACAATGGTCAGCTCCGGCCTCGCATTTGGTGCCCATAGATGGGTTGCGACTATCCAGAGGCATTGTGAATCCCTTGCTATTCTCATGGCTGCTGCACCATCTGATGACCCTACAGTCATCAGCCCGTCTGGAAAGAAAAGTATGTCTAAGCTTGCTCAGCGGATGACGGACTACTTCTGGTCTGGAGTTTCTCCGTCTTCGGCTTGTAAGTGGGACATTATTCCGATTAATAACATGGGAAGCATTGACATGAGAATCATGTCTCGAAAAATTCCAGATGCTTCTGGAGAAAATCTTAGCATTGTGCTAAGTGCTGCAACATCTGTTTGGATGCCGGTGTCGCGGCAAAGGGTGTTTGAATTTCTCCGCGACGCACGCTTGAGAGGTGAATGGGATCTTTTGTCCAGTGGTGGAACAATGCAGGAAATGGTCCACATTGCTACAGGAGGACTTGGAAATTCTGTTTCTATCATTTCCACTGATAATGCTGTGAATGGAAACGAGGGGCTGTATCTGCAAAATTCATGGACCGATAGCTCTGGTTCGATGGTTGTCTACTCTCCCATCAACATGCAGTCCTTGAACTTGGTGATGTCTGGAGGAGATTCCTCATTTGTCGCTCTTTTGCCATCCGGATTTTCAATTCTTCCGGATGGCTATTCGAGTAACAACAACGTCATTGGAACTTCAAGTGACGGAAGCAGCAGCAGTGGCAGTGACAATGACAACAGCGGATGCTTGCTCACTGTTGGATTGCAAATGTTGCTGAACAACCATCCATCAAGCAAGCTGACAGCTGAATCGGTTGATACTGTCAATAACCACCTTGCGACCACCATCCAGAAGGTCAAAGACGCTCTCGGAGTCGCTTGA 2304 0.467 MDPNGASGSNGANGANRVNGPNGEMRLPGENFDASVMGRMREDDFDSRSGSENFDASGDEAGDDQQQNKRKKKYHRHTPQQIQELENFFKECPHPDEKQRADLSRKLSLDNKQVKFWFQNKRTQMKTQLERHENMLLRQENEKLRAENSMLKEALANPICNNCGGPGITGQISMDDHQLRIENARLKEELSRLTALTQYLGRPVSALTAMSMQNPNLGLEFGMGRNGIAGPSNYNMQLPMGFVMGDGVMGAAPANSGMQPPMGMIGNDPQQERSMLVDLALAAMNELIRLCEPESPLWIKSPDTGKDVLNHEEYARIGSPFNTPLPNGYTTEATRETGLLYTNSAALVETFLDADRWSEMFPCMIAQAATMDVLSNGMGGTRNGAMQVMQAEVQLPSPFVPVRQYRFLRFCKQHGEGIWALVDVSVDLGRNGPNSIPYMSSKKLPSGCILQDVDGLCKITWVDHTQYDESAVHQTYRTMVSSGLAFGAHRWVATIQRHCESLAILMAAAPSDDPTVISPSGKKSMSKLAQRMTDYFWSGVSPSSACKWDIIPINNMGSIDMRIMSRKIPDASGENLSIVLSAATSVWMPVSRQRVFEFLRDARLRGEWDLLSSGGTMQEMVHIATGGLGNSVSIISTDNAVNGNEGLYLQNSWTDSSGSMVVYSPINMQSLNLVMSGGDSSFVALLPSGFSILPDGYSSNNNVIGTSSDGSSSSGSDNDNSGCLLTVGLQMLLNNHPSSKLTAESVDTVNNHLATTIQKVKDALGVA 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01269 767 MobiDBLite consensus disorder prediction 1 17 - -
Trre12g01269 767 CDD START_ArGLABRA2_like 273 500 - -
Trre12g01269 767 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Trre12g01269 767 Gene3D - 58 144 - -
Trre12g01269 767 SUPERFAMILY Homeodomain-like 57 128 IPR009057 -
Trre12g01269 767 SMART START_1 278 501 IPR002913 GO:0008289
Trre12g01269 767 SMART HOX_1 70 132 IPR001356 GO:0003677
Trre12g01269 767 MobiDBLite consensus disorder prediction 1 78 - -
Trre12g01269 767 Pfam Homeodomain 71 126 IPR001356 GO:0003677
Trre12g01269 767 CDD homeodomain 71 128 IPR001356 GO:0003677
Trre12g01269 767 ProSiteProfiles START domain profile. 269 504 IPR002913 GO:0008289
Trre12g01269 767 SUPERFAMILY Bet v1-like 272 502 - -
Trre12g01269 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 67 764 IPR042160 -
Trre12g01269 767 FunFam Homeobox-leucine zipper protein HDG1 57 144 - -
Trre12g01269 767 MobiDBLite consensus disorder prediction 36 50 - -
Trre12g01269 767 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Trre12g01269 767 Pfam START domain 279 501 IPR002913 GO:0008289
Trre12g01269 767 Coils Coil 122 157 - -
Trre12g01269 767 SUPERFAMILY Bet v1-like 520 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01269 Trre-Chr12 12696276 12699901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01269 22 764 Homeobox Transcription Factor Family AT3G61150 49.340 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre12g01269 START 1.4e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01269 K09338 - gmx:100794400 945.651