Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01268 ATGGGTAGGATGAGGGAGGATGATTTTGATAGCAGGTCAGGAAGTGAAAATTTTGATGCTTCCGGTGATGAAGCAGATGCTGGTGATGATCAACAACAAAATAAGCGGAAAAAGAAATATCATCGCCATACTCCTCAGCAAATTCAAGAGCTCGAAAATTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAGCTGATCTTAGCCGGAAACTTGGCTTGGACATCAAGCAAGTTAAGTTCTGGTTTCAGAATAAACGAACGCAAATGAAGACACAACTGGAACGCCATGAGAACATGATTCTTAGGCAGGAAAACGAGAAGCTACGAGCTGAAAACAGTATGCTGAAGGAGGGTCTACCAAATGCAATTTGCAACAACTGTGGTGGCCCGGGAATTGCTGGACAAATTTCAATGGACGATCACCAGCTTAGAATTGAAAATGCTCGACTGAAGGAGGAGTTGGCCCGACTGTCTGCCTTAACCCAGTTCCTCGGCCGACCAGTCTCTGCATTGACTGCAATGTCTATGCAGAATCCGAATTTAGGTCTTGAATTCGGTATGGGAAGGAATGGAATTGCTGGTCCGAGCAATTACAACATGCAGCTGCCAATGGGAGATGGTGTTATGGGAGCTGCACCGGCAAATTCTGGAATGCAACCACCGATGGGAATGATTGGAAATGATCCCCAGCAGGAGAGATCTATGCTTGTCGATCTCGCATTAGCTGCGATGAATGAACTCATCAAACTGTGCGATCCTGAATCCCCCCTCTGGATTAAGAGTCCAGATACCGGGAAGGATGTGCTTAACATTGAAGAGTATGCGCGGATTGGTTCTCCATTTAACACTCCGATCCCAAATGGTTATACAACTGAAGCTACAAGAGAAACCGGGCTGTTATACACCAACAGTGCGGCTCTCGTGGAAACATTCCTAGACGCGGACCGGTGGTCGGAGATGTTTCCATGTATGATTGCTCAAGCTGCAACCTTGGATGTTTTATCCAATGGGATGGGTGGAACAAGAAATGGAGCTATGCAAGTGATGCATGCTGAGGTTCAATTACCTTCTCCATTTGTTCCGGTTCGACAATATCGTTTCATTAGGTTCTGCAAGCAGCATGGTGAAGGTATTTGGGTCCTGGTTGACATTTCGACCGACCTTGGTCGTAATGGTCCAAACGGCATCCCTTACATGAGCTGTAAGAAGCTTCCATCTGGATGCATTTTGCGGGACATGGATGGCTTGTGCAAGATCACTTGGGTGGATCATTCTCAATATGACGAGAGTGCTGTCCACCAAACATATCGCACAATGGTTAGTTCCGGCCTCGCATTTGGTGCCCATAGATGGGTTGCGACTCTCCAGAGGCACTGTGAATCCCTTGCTATCCTCATGGTTGCTGCACCATCTGATGACCCTACAGTCATAAGCCCGTCTGGAAAGAAAAGCATGTCAAAGCTTGCTCAGCGGATGACAAACTACTTATGGTCTGGAATTTCTCCGTCTTCGGCTTGTAAGTGGGACATTATTCCCAATAATAACATGGGAAGCATTGAGGTGAGAATCATGTCCCGAAAAATTCCAGATGCTTCTGGAGAAAATCTTAGCATTGTGCTAAGTGCTGCGACATCTGTTTGGATGCCGGTGTCGCGGCAAAGGGTGTTTGACCTCCTCCGCGATGCACGCTTGAGAGGCGAATGGGATCTGTTGTCCAGTGGTGGAACAATGCAGGAAGTGGTCCACATTGCTACAGGAGGACATGGAAATTCCGTTTCTATCATTTCCTCTGATAATGTTGCGAATGGAAACGAGGGGCTGTATCTGCAAGATTCATGGACCGATAGCTCTGGTTCGATGGTTGTCTACTCTCCCATCAACATGCAGTCCTTGAACTTGGTGATGTCTGGAGGAGATTCTTCATTTGTCTCTCTCTTGCCATCCGGATTTTCAATTCTTCCGGATGGCTATTCGAGTAACAGCAACATCATTGGAACTTCAAGTGACGGAAGCAGAAGCAGTGGCAGCGACAATGACAACAGCGGATGCTTGCTCACGGTTGGATTGCAAATGTTGCTGAACAACCATCCATCAAGCAAGCTGACAACTGAATCAGTTGATATTGTCAATAACCACATTGCGACCACCATCCAGAAGGTCAAAGACGCTCTCGGAGTCGCTTGA 2190 0.4694 MGRMREDDFDSRSGSENFDASGDEADAGDDQQQNKRKKKYHRHTPQQIQELENFFKECPHPDEKQRADLSRKLGLDIKQVKFWFQNKRTQMKTQLERHENMILRQENEKLRAENSMLKEGLPNAICNNCGGPGIAGQISMDDHQLRIENARLKEELARLSALTQFLGRPVSALTAMSMQNPNLGLEFGMGRNGIAGPSNYNMQLPMGDGVMGAAPANSGMQPPMGMIGNDPQQERSMLVDLALAAMNELIKLCDPESPLWIKSPDTGKDVLNIEEYARIGSPFNTPIPNGYTTEATRETGLLYTNSAALVETFLDADRWSEMFPCMIAQAATLDVLSNGMGGTRNGAMQVMHAEVQLPSPFVPVRQYRFIRFCKQHGEGIWVLVDISTDLGRNGPNGIPYMSCKKLPSGCILRDMDGLCKITWVDHSQYDESAVHQTYRTMVSSGLAFGAHRWVATLQRHCESLAILMVAAPSDDPTVISPSGKKSMSKLAQRMTNYLWSGISPSSACKWDIIPNNNMGSIEVRIMSRKIPDASGENLSIVLSAATSVWMPVSRQRVFDLLRDARLRGEWDLLSSGGTMQEVVHIATGGHGNSVSIISSDNVANGNEGLYLQDSWTDSSGSMVVYSPINMQSLNLVMSGGDSSFVSLLPSGFSILPDGYSSNSNIIGTSSDGSRSSGSDNDNSGCLLTVGLQMLLNNHPSSKLTTESVDIVNNHIATTIQKVKDALGVA 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01268 729 SUPERFAMILY Bet v1-like 482 722 - -
Trre12g01268 729 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Trre12g01268 729 Coils Coil 88 120 - -
Trre12g01268 729 Pfam Homeodomain 37 92 IPR001356 GO:0003677
Trre12g01268 729 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Trre12g01268 729 FunFam Homeobox-leucine zipper protein HDG1 23 110 - -
Trre12g01268 729 SUPERFAMILY Bet v1-like 234 464 - -
Trre12g01268 729 ProSiteProfiles START domain profile. 231 466 IPR002913 GO:0008289
Trre12g01268 729 CDD homeodomain 37 94 IPR001356 GO:0003677
Trre12g01268 729 SMART START_1 240 463 IPR002913 GO:0008289
Trre12g01268 729 MobiDBLite consensus disorder prediction 1 44 - -
Trre12g01268 729 MobiDBLite consensus disorder prediction 1 19 - -
Trre12g01268 729 Gene3D - 24 110 - -
Trre12g01268 729 Pfam START domain 241 463 IPR002913 GO:0008289
Trre12g01268 729 CDD START_ArGLABRA2_like 235 462 - -
Trre12g01268 729 SMART HOX_1 36 98 IPR001356 GO:0003677
Trre12g01268 729 SUPERFAMILY Homeodomain-like 23 94 IPR009057 -
Trre12g01268 729 Coils Coil 142 162 - -
Trre12g01268 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 33 726 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01268 Trre-Chr12 12675293 12679017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01268 5 726 Homeobox Transcription Factor Family AT3G61150 48.645 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre12g01268 START 3.6e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01268 K09338 - gmx:100794400 897.501