Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01267 ATGGATCCTAATGGTGTTAATGGTGCAAGTGGTTCAAATGGTGCTTATGGTGCAAGTGGTTCAAATTTTGATGCTAGTGTGATGGGTAGGATGAGGGAGGATGATTTTGATAGCAGGTCAGGAAGTGAAAATTTTGATGCTTCCGGTGATGAAGCAGATGCTGGTGATGATCAACAACAAAATAAGCGGAAAAAGAAATATCATCGCCATACTCCTCAGCAAATTCAAGAGCTCGAAAATTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAGCTGATCTTAGCCGGAAACTTGGCTTGGACATCAAGCAAGTTAAGTTCTGGTTTCAGAATAAACGAACGCAAATGAAGACACAACTGGAACGCCATGAGAACATGATTCTTAGGCAGGAAAACGAGAAGCTACGAGCTGAAAACAGTATGCTGAAGGAGGGTCTACCAAATGCAATTTGCAACAACTGTGGTGGCCCGGGAATTGCTGGACAAATTTCAATGGACGATCACCAGCTTAGAATTGAAAATGCTCGACTGAAGGAGGAGTTGGCCCGACTGTCTGCCTTAACCCAGTTCCTCGGCCGACCAGTCTCTGCATTGACTGCAATGTCTATGCAGAATCCGAATTTAGGTCTTGAATTCGGTATGGGAAGGAATGGAATTGCTGGTCCGAGCAATTACAACATGCAGCTGCCAATGGGAGATGGTGTTATGGGAGCTGCACCGGCAAATTCTGGAATGCAACCACCGATGGGAATGATTGGAAATGATCCCCAGCAGGAGAGATCTATGCTTGTCGATCTCGCATTAGCTGCGATGAATGAACTCATCAAACTGTGCGATCCTGAATCCCCCCTCTGGATTAAGAGTCCAGATACCGGGAAGGATGTGCTTAACATTGAAGAGTATGCGCGGATTGGTTCTCCATTTAACACTCCGATCCCAAATGGTTATACAACTGAAGCTACAAGAGAAACCGGGCTGTTATACACCAACAGTGCGGCTCTCGTGGAAACATTCCTAGACGCGGACCGGTGGTCGGAGATGTTTCCATGTATGATTGCTCAAGCTGCAACCTTGGATGTTTTATCCAATGGGATGGGTGGAACAAGAAATGGAGCTATGCAAGTGATGCATGCTGAGGTTCAATTACCTTCTCCATTTGTTCCGGTTCGACAATATCGTTTCATTAGGTTCTGCAAGCAGCATGGTGAAGGTATTTGGGTCCTGGTTGACATTTCGACCGACCTTGGTCGTAATGGTCCAAACGGCATCCCTTACATGAGCTGTAAGAAGCTTCCATCTGGATGCATTTTGCGGGACATGGATGGCTTGTGCAAGATCACTTGGGTGGATCATTCTCAATATGACGAGAGTGCTGTCCACCAAACATATCGCACAATGGTTAGTTCCGGCCTCGCATTTGGTGCCCATAGATGGGTTGCGACTCTCCAGAGGCACTGTGAATCCCTTGCTATCCTCATGGTTGCTGCACCATCTGATGACCCTACAGTCATAAGCCCGTCTGGAAAGAAAAGCATGTCAAAGCTTGCTCAGCGGATGACAAACTACTTATGGTCTGGAATTTCTCCGTCTTCGGCTTGTAAGTGGGACATTATTCCCAATAATAACATGGGAAGCATTGAGGTGAGAATCATGTCCCGAAAAATTCCAGATGCTTCTGGAGAAAATCTTAGCATTGTGCTAAGTGCTGCGACATCTGTTTGGATGCCGGTGTCGCGGCAAAGGGTGTTTGACCTCCTCCGCGATGCACGCTTGAGAGGCGAATGGGATCTGTTGTCCAGTGGTGGAACAATGCAGGAAGTGGTCCACATTGCTACAGGAGGACATGGAAATTCCGTTTCTATCATTTCCTCTGATAATGTTGCGAATGGAAACGAGGGGCTGTATCTGCAAGATTCATGGACCGATAGCTCTGGTTCGATGGTTGTCTACTCTCCCATCAACATGCAGTCCTTGAACTTGGTGATGTCTGGAGGAGATTCTTCATTTGTCTCTCTCTTGCCATCCGGATTTTCAATTCTTCCGGATGGCTATTCGAGTAACAGCAACATCATTGGAACTTCAAGTGACGGAAGCAGAAGCAGTGGCAGCGACAATGACAACAGCGGATGCTTGCTCACGGTTGGATTGCAAATGTTGCTGAACAACCATCCATCAAGCAAGCTGACAACTGAATCAGTTGATATTGTCAATAACCACATTGCGACCACCATCCAGAAGGTCAAAGACGCTCTCGGAGTCGCTTGA 2271 0.4672 MDPNGVNGASGSNGAYGASGSNFDASVMGRMREDDFDSRSGSENFDASGDEADAGDDQQQNKRKKKYHRHTPQQIQELENFFKECPHPDEKQRADLSRKLGLDIKQVKFWFQNKRTQMKTQLERHENMILRQENEKLRAENSMLKEGLPNAICNNCGGPGIAGQISMDDHQLRIENARLKEELARLSALTQFLGRPVSALTAMSMQNPNLGLEFGMGRNGIAGPSNYNMQLPMGDGVMGAAPANSGMQPPMGMIGNDPQQERSMLVDLALAAMNELIKLCDPESPLWIKSPDTGKDVLNIEEYARIGSPFNTPIPNGYTTEATRETGLLYTNSAALVETFLDADRWSEMFPCMIAQAATLDVLSNGMGGTRNGAMQVMHAEVQLPSPFVPVRQYRFIRFCKQHGEGIWVLVDISTDLGRNGPNGIPYMSCKKLPSGCILRDMDGLCKITWVDHSQYDESAVHQTYRTMVSSGLAFGAHRWVATLQRHCESLAILMVAAPSDDPTVISPSGKKSMSKLAQRMTNYLWSGISPSSACKWDIIPNNNMGSIEVRIMSRKIPDASGENLSIVLSAATSVWMPVSRQRVFDLLRDARLRGEWDLLSSGGTMQEVVHIATGGHGNSVSIISSDNVANGNEGLYLQDSWTDSSGSMVVYSPINMQSLNLVMSGGDSSFVSLLPSGFSILPDGYSSNSNIIGTSSDGSRSSGSDNDNSGCLLTVGLQMLLNNHPSSKLTTESVDIVNNHIATTIQKVKDALGVA 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01267 756 MobiDBLite consensus disorder prediction 28 46 - -
Trre12g01267 756 MobiDBLite consensus disorder prediction 1 20 - -
Trre12g01267 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 60 753 IPR042160 -
Trre12g01267 756 SUPERFAMILY Bet v1-like 509 748 - -
Trre12g01267 756 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Trre12g01267 756 ProSiteProfiles START domain profile. 258 493 IPR002913 GO:0008289
Trre12g01267 756 MobiDBLite consensus disorder prediction 1 71 - -
Trre12g01267 756 Gene3D - 51 137 - -
Trre12g01267 756 Pfam Homeodomain 64 119 IPR001356 GO:0003677
Trre12g01267 756 Coils Coil 115 147 - -
Trre12g01267 756 CDD homeodomain 64 121 IPR001356 GO:0003677
Trre12g01267 756 SMART START_1 267 490 IPR002913 GO:0008289
Trre12g01267 756 SUPERFAMILY Homeodomain-like 50 121 IPR009057 -
Trre12g01267 756 SUPERFAMILY Bet v1-like 261 491 - -
Trre12g01267 756 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Trre12g01267 756 SMART HOX_1 63 125 IPR001356 GO:0003677
Trre12g01267 756 FunFam Homeobox-leucine zipper protein HDG1 50 137 - -
Trre12g01267 756 Coils Coil 169 189 - -
Trre12g01267 756 CDD START_ArGLABRA2_like 262 489 - -
Trre12g01267 756 Pfam START domain 268 490 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01267 Trre-Chr12 12675212 12679017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01267 12 753 Homeobox Transcription Factor Family AT3G61150 47.826 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre12g01267 START 3.8e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01267 K09338 - gmx:100794400 909.827