Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01265 ATGAACTTCCTCCGGCGACTATTCGGCGGCAAAAAACACCGCAATCAACCACAAGAACCTACCAAAACCACCGCAAAAAAAGACAAAAGAAGCTGGAGCTTCGCAAAGAACAACACAAGAGACAAAACAAACTCACACTCATTACATAACAACAAAAATTCTGACCCTTCTTCTTCTCCTTTCGCCGGAAATTACGATGCCAATAAACATGCCATTGCTGTTGCTGCTGCCACTGCCGCTGTTGCTGAGGCTGCACTCGCCGCCGCTCATGCTGCTGCTGAAGTTGTTAGACTGACTAGTAACACCGGAGCAGGAAAAAATGCAACTCCGGTGCATGACCGGCGACCGTTGCAGGAGGAGATTGATGCTGCCGTGAAGATGCAGTCGGCGTTCCGAGGTTACTTGGCAAGGAGGGCATTAAGAGCACTTAAAGCATTGGTGAAGTTGCAAGCATTGGTGAGAGGTCACATTGTAAGAAAACAAACAGCTGATATGCTAAGACGAATGCAAACATTGGTCCGACTTCAGTCTCGAGCACGTGCAAGTCGTGTGCACATTTCCGATAATAATACGCACTCTTTCAAGTCTCCACTTTCTTATTACCTTGTTCCGGCTGATTATGAGCACCCTCTTCGTGTCTATAGTACAAAATTTGACGGATCTTCCATCCTTAAGAGATGTAGTTCCAATGCAAATTTTAGAGACATGAACTTAGAACGAGCCCGGTTTGGTTCGAATTGGTTAGACGGTTGGATGGAAGAAAACTCATGGAACCAAACCGGCGACGCTTCATCGAAAAAAGTACAATTTGATGATGAAAAGAGTGATAAAATTCTTGAAATAGATACATGGAAGCCAAATTTGACCTCACACCATAGTACTAGTACATCTTTTCAACATCATTATTCATCTTGTGATTACAATAGTGAGAATTTTATGGTACACGAGTCACCGTCGAAACGTTTGTCTAAACCTCACAATCCAAGTCTCTCTTCTATGAAACATCATAAAGGTAAAGAAGAAGTAGCTTCTTCGCGAACAGCCGAGAATAGTCCGCAAGCGTTTTCGGCTTCATCGAGAATCGAAAGTGTTTCAAGGAGAGGTCCTTTTACACCTACTAAAAGTGAGTCTTCATGGGGTTTTTTCAATGGTTACTCTGGCTATCCTAGTTACATGGCAAATACTCAATCTTCTAGGGCTAAGGTTAGGTCACAAAGTGCTCCAAGACAAAGGCTAGAGTTTGAGAGAAGTGGTTCAACTACTAGGTCTATTCAAGGTCTTTGGGAATCAGGTTCTAATTCAGATAAGGATTTTGATTTTAAGACCAAGGTTTATCCAACCACAAGTAGCTTGAACAAAATTGGGAGCACAAATTTAAGGTGA 1383 0.4281 MNFLRRLFGGKKHRNQPQEPTKTTAKKDKRSWSFAKNNTRDKTNSHSLHNNKNSDPSSSPFAGNYDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSNTGAGKNATPVHDRRPLQEEIDAAVKMQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQSRARASRVHISDNNTHSFKSPLSYYLVPADYEHPLRVYSTKFDGSSILKRCSSNANFRDMNLERARFGSNWLDGWMEENSWNQTGDASSKKVQFDDEKSDKILEIDTWKPNLTSHHSTSTSFQHHYSSCDYNSENFMVHESPSKRLSKPHNPSLSSMKHHKGKEEVASSRTAENSPQAFSASSRIESVSRRGPFTPTKSESSWGFFNGYSGYPSYMANTQSSRAKVRSQSAPRQRLEFERSGSTTRSIQGLWESGSNSDKDFDFKTKVYPTTSSLNKIGSTNLR 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01265 460 MobiDBLite consensus disorder prediction 345 370 - -
Trre12g01265 460 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Trre12g01265 460 MobiDBLite consensus disorder prediction 316 370 - -
Trre12g01265 460 MobiDBLite consensus disorder prediction 399 435 - -
Trre12g01265 460 Pfam IQ calmodulin-binding motif 122 141 IPR000048 GO:0005515
Trre12g01265 460 Pfam IQ calmodulin-binding motif 144 161 IPR000048 GO:0005515
Trre12g01265 460 SMART iq_5 119 141 IPR000048 GO:0005515
Trre12g01265 460 SMART iq_5 142 163 IPR000048 GO:0005515
Trre12g01265 460 MobiDBLite consensus disorder prediction 399 432 - -
Trre12g01265 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 165 IPR027417 -
Trre12g01265 460 Pfam Protein of unknown function (DUF4005) 351 418 IPR025064 -
Trre12g01265 460 ProSiteProfiles IQ motif profile. 120 148 IPR000048 GO:0005515
Trre12g01265 460 Gene3D - 121 162 - -
Trre12g01265 460 MobiDBLite consensus disorder prediction 12 48 - -
Trre12g01265 460 MobiDBLite consensus disorder prediction 1 62 - -
Trre12g01265 460 PANTHER IQ-DOMAIN 5-RELATED 26 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01265 Trre-Chr12 12638983 12645792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01265 1 428 IQD Protein Family AT5G62070 45.824 5.22e-60 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01265 - - gmx:100785181 550.436