Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01261 ATGACAAATCCGATGTGCAACAATTTTGTCAGCCGAACTATGTCAATGGAAGAACAAGAGATTAGATCTGAGAATGCTCGACTGATGGAGAGATCTAAGCTTACACATCTTGCATCAACTGCTATGGATGAACTCATTAAGATGGCTGAACCTGACTCCCATCTCTGGATTAAGAGTCTTGAGAGAGGGAATGAAGTGTTTAACCATGACGAGTATGAAAATATTCGTTCTCCATTTAACACTCCGAAACCAAATGGTTTTGTAACTGAAGTTACAAGAGAGACTGTGATGTTACACACCACCAATACTGCTGCACTCATCGAAACATTTTTGGATGCGGATCGATGGGCAGAGATGTTTCCGTGTATGATTGTTGAAGCTGAAACCTTGGATGTACTATCTAATGGAATGGATGGAACCAAAAATGGATCTATGCAACTGATGCATGTTGAGATTCAATTACCTACTCCACTGGTTTCGGTCCGAGAATATAATCTCATCAGGTTTTGCAAGCAGCAAGCATGTTGA 528 0.4072 MTNPMCNNFVSRTMSMEEQEIRSENARLMERSKLTHLASTAMDELIKMAEPDSHLWIKSLERGNEVFNHDEYENIRSPFNTPKPNGFVTEVTRETVMLHTTNTAALIETFLDADRWAEMFPCMIVEAETLDVLSNGMDGTKNGSMQLMHVEIQLPTPLVSVREYNLIRFCKQQAC 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01261 175 ProSiteProfiles START domain profile. 27 175 IPR002913 GO:0008289
Trre12g01261 175 SUPERFAMILY Bet v1-like 29 172 - -
Trre12g01261 175 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 174 IPR042160 -
Trre12g01261 175 Pfam START domain 37 172 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01261 Trre-Chr12 12595403 12596177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01261 30 174 Homeobox Transcription Factor Family AT4G00730 48.966 9.66e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01261 K09338 - tpra:123905936 215.698