Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01231 ATGGCACCTTCTCGGGTGGCAGGAGGTTTAGCTCAATCATCATCAAGTTCTGGAATTTTCTTTCAAGGAGAGGGGCAGTCACATAATTTAGTCAACTCTCACTTGAGCTCATCGTTAGTCAACTCATCTAACACTGTTCCTGGAACTGGTCATTCCAACCTTGGTCCAGTTTCTGGGGATATGAATAATGCAATTTTGAACAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCACTCTCTGGTGACCGCCATATGCAAAGAAGTGCTAGCATTAATGGTGACTCATACTTGAGATTACCTGCCTCACCTTTGTCATTCACGTCAAATAATATTAGCATTTCTGGGTCACCTGCAATGGATGGTTCCTCTGTAGTACAGCAGAATTCTCATCAAGATCAGAATGCTCAACAAATGCAGCAGAATCAACAGAAGCTGCAGGGTGCTTCAAGTTCTATGCATTTGCCTGCCTCGCAAACTGGCTCATCTTCGCACCAAATGGGTGCTCAAGTAGCAGGATCTTTCATTCAAGATCCAAACAATATATCTCACTTGCTGAAAAAGCGCAGGCTGGATATCAAACAAGATGATATAATGCAACAACAGGTAATACAACAGCTTCTTCAGAGACAAGACCCTACACAATTCCAAAGTCGTAGTCCACAGTTACAGGCTATGCTTCAGCAACAGCACAGGCTTAAGCAACAACAAATCTTTCAGTCATTGCCCCAGGCCCAGCGAATACAATTGATGCAGCAGCAACAGCAACAGCAGCAGCAGCAACAACAACAACAAATGCAGAGGCAGCAAATACAACAACAAATGATGCAGCCCTCAGCTGGTGTTAAGCGTCCCCCTGATAGTGGTGTTGGAGGTGTATGTGCCCGTCGATTGATGCAGTACCTCTATCATCAAAGACAGCGACCAAGTGATAATAGTATTGCATATTGGAGGAAATTTGTGGCTGAATATTACTCTCCCCGTGCAAAGCAACGGTGGTGCTTGGCATTATATAGTAATGCTGGACACCATACAGCTGGTGTTTTACCGCAAGCAACTACGCATGCTTGGCAATGTGATATATGTGGAACTAAATCTGGGAGAAGGGGATTTGAAGCAACTTTTGATATACTACCCAGACTTAACGTAGTCAAATTTGGTGGTGGTGTGATCGACGAACTTCTGTTTCTGGACTTGCCGCGTGAAATAAGATTTTCTTCTGGTTTGATGATGTTAGAATATACAAAAGCGGTTCAAGAGTGTGTCTACGAGCAGCTCCGCGTTGTTCGCGAGGGTCAACTTCGTATCGTATTTACTCAAGACCTGAAGATATTTTCTTGGGATTTCTGTGTAAGGCGCCATGAAGAACTTCTTCCTCGAAAGTTAGTTGCACCACAGGTCAACCAATTAGTTCAAGTAGCGCAAAAATGCCAAAGTACAATTTCTGAAAGTGGGTCGGATGGGGTTTCTCAGCATGACTTGCAAACAAACAGCAACATGGTCCTAACTGCTGGGCGTCAGCTTGCAAAGAGTTTGGAGCTACAATCACTAAATGACTTGGGCTTTTCAAAAAGATTTGTGAGAACTTTGCAGATTTCTGAGGTTTGCAATAGCATGAAAGATCTAATCGATATCTGTTTTGATCACAATGTCGGAGCAATTGAGAGTTTGAAAAATTATTCTCAATTTTCAACCTCATCAAAGCACCAAATGCAGAAGATGCAGGAGATGGAACAGGCAGCAAATGCTCAAGGTCTCCCACCTGATCGAAACACACTTAATAAGCTGATGACATTGAATCCTGGATCTAACAATATTATAAACAACAATCACAATATGGGCAATCGTGGTACTTTGACTGGGCCATCACAAGCTGCTCTGGCAATGTCCAGTTACCAGAATCTTCTCATGAGACAAAACTCGATGAATTCAAGCCCCGGCTCACTTCATCGAGAAGGGTCCCCTTTTAATAACTCGATCCAGAGTCCCTCAGCAGCTTCTTTGCAAGGTGCTGGTGCTGCTGCTATAATCCCAGGCTCTATGCAGAATTCACCTCACAATAGTACTGGTGGTTTCTCAAATCAACATCTACCCTTACAACAGCGGCGGCAGCAGCAGCAGCAACAACAACACCTTCAACAACGCTCGTTAAGTGCGAATAATTTACCTCAACAAAATCACTCACAGGGACCTCAAGGAAATCAATCACTGCAACAACAGATGATCCAGCAACTACTGCAGGATATGTCAAATAACAATGGGGGAGTTCAACAACAGTCTCATAGTGGACCCAATGTAAGTGGGAATATGGCAAAGAATAATTTGGGTTTTGGGGGACAAACTCCACCCACAACTGGAGGAGGCTCTGCCAGTGGTCCAGCAAATAATGGACCTGTTTCAAGGAGTAATAGCTTCAAAGCTGCTTCAAACAGTGATTCTTCTGCAGCAGCTGGTGGAGGCAGCAACAATGGATTCAACCAGAGAGCATCTGATATGCAACAAAATCTTGCTTTGCAAGATGTGGCTTCGGAATTTGGCCATGAGTTTGCAGATAACCCCTTCTTTAACAGTGATCTTGATGATAACATGGGTTTTAACTGGAAGACATGA 2637 0.4372 MAPSRVAGGLAQSSSSSGIFFQGEGQSHNLVNSHLSSSLVNSSNTVPGTGHSNLGPVSGDMNNAILNSVANSAPSVGASSLVTDANSALSGDRHMQRSASINGDSYLRLPASPLSFTSNNISISGSPAMDGSSVVQQNSHQDQNAQQMQQNQQKLQGASSSMHLPASQTGSSSHQMGAQVAGSFIQDPNNISHLLKKRRLDIKQDDIMQQQVIQQLLQRQDPTQFQSRSPQLQAMLQQQHRLKQQQIFQSLPQAQRIQLMQQQQQQQQQQQQQQMQRQQIQQQMMQPSAGVKRPPDSGVGGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKQRWCLALYSNAGHHTAGVLPQATTHAWQCDICGTKSGRRGFEATFDILPRLNVVKFGGGVIDELLFLDLPREIRFSSGLMMLEYTKAVQECVYEQLRVVREGQLRIVFTQDLKIFSWDFCVRRHEELLPRKLVAPQVNQLVQVAQKCQSTISESGSDGVSQHDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRFVRTLQISEVCNSMKDLIDICFDHNVGAIESLKNYSQFSTSSKHQMQKMQEMEQAANAQGLPPDRNTLNKLMTLNPGSNNIINNNHNMGNRGTLTGPSQAALAMSSYQNLLMRQNSMNSSPGSLHREGSPFNNSIQSPSAASLQGAGAAAIIPGSMQNSPHNSTGGFSNQHLPLQQRRQQQQQQQHLQQRSLSANNLPQQNHSQGPQGNQSLQQQMIQQLLQDMSNNNGGVQQQSHSGPNVSGNMAKNNLGFGGQTPPTTGGGSASGPANNGPVSRSNSFKAASNSDSSAAAGGGSNNGFNQRASDMQQNLALQDVASEFGHEFADNPFFNSDLDDNMGFNWKT 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01231 878 MobiDBLite consensus disorder prediction 689 725 - -
Trre12g01231 878 MobiDBLite consensus disorder prediction 760 837 - -
Trre12g01231 878 MobiDBLite consensus disorder prediction 649 725 - -
Trre12g01231 878 MobiDBLite consensus disorder prediction 649 677 - -
Trre12g01231 878 Coils Coil 261 283 - -
Trre12g01231 878 PANTHER LIM DOMAIN-BINDING PROTEIN 42 850 IPR029005 -
Trre12g01231 878 MobiDBLite consensus disorder prediction 278 297 - -
Trre12g01231 878 Pfam LIM-domain binding protein 306 567 IPR029005 -
Trre12g01231 878 MobiDBLite consensus disorder prediction 122 177 - -
Trre12g01231 878 MobiDBLite consensus disorder prediction 38 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01231 Trre-Chr12 12402911 12407359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01231 293 569 C2H2 Transcription Factor Family AT1G43850 55.197 1.01e-97 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01231 - - gmx:100816886 1090.87