Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01230 ATGGATTCAATCTCTTCCACCATAGACAATGAAGTAGCCATTGATCTAACCCCACTCATTAAACTATACAAAAATGGTCGTGTTGAAAGACTAATGGGTGAAGAGGTTGTTCCACCATCCTTTGATCCAACAACAAATGTTGAATCAAAAGATGTTATAATTTCCAAACAACATAACATATCAGCAAGACTTTTCATTCCCATAATAACAACATTAACATACCCACAAACCCAAAAACTCCCTCTCCTTGTTTACTTCCATGGTGGTGCTTTCTGTATTGGAACCCCTTTCTCACCAACGTACCATAACTACCTTAACTCTGTTACTTCACTTGCCAATGTTATTGGTGTCTCTGTTAACTATAGAAGAGCGCCGGAACACCCTGTTCCTATTGCTCATGAAGATTCATGGCTTGCACTCAAATGGGTCGCTTCACATGTTGGTGGAAATGGTTCTGATGAATGGTTGAATAAATATGCAGATTTTGAGAAAGTGTTTTTAGGAGGTGACAGTGCTGGTGCTAATATTTCACACTATTTGGGTATTCGTGTTGGGAAAGAAAAATTGGATGGTGTGAAAATTGAAGGGATTGTTTATATTCATCCTTATTTTTGGGGAGTGGATCCAATTGGGTCAGAATTGGATCGGGTTGAAGATGTAGAATCAAATCATAATTTATGGCGTTTTGCTTGTCCAAACACAAGTGGATCCGATGACCCGTTAATTAACCCGGCTAAGGAACCTAATTTGGGGAGTTTGGGTTGTAAGAGAGTGCTTGTTTGTGTTGCTGAGCAAGATTTGGTGAAAGATAGAGGTTGGTATTATAAAGAGTTGCTTGAAAAAAATGGTTGGGGTGGTGTTGTTGAAGTGTTTGAAACAGAGAATGAGAATCATGGTTTTCATATATTTAAACCAACATGTCAAAATGCTAAGCCTGCTTCCTTGACCCTGCTTTATGGGCTATGTTCGGAGATATGTCTTCTCACGGAGATTAATGTCCACATATTCAAAGCCAAGGCTATCCGAGTTAGATTCGGTTGTCAGAAACACCAGATGGAAATGAATTCAGAGCCTTTTGTGCTTGATTCATTGACTCATAAGATGCTATACAATTGGACATATACTTCACCTGTATTTCCCATGTCTCAGGAAAACAATTCGCAGAAATTCAAGCTACCTCAGCCTGTACTGTGCATTGGAGGCATTATGCTACTGGAGCTGTTTGAGAGAGATCTCAGACAAGAACGGCATAATTTATTAGTCAACCCTGTTGAAGTTGTTGGAAGAAAAATATCTCGAGCATTTACTGTTAGGATGCTTCGACGTGGAAGGTGTAGCTTGATATACCGCCCTCGCAAACACAAGGAACGAGGTTGTTACTGCTGGCTGAAGAGGATGCTGTAG 1404 0.3996 MDSISSTIDNEVAIDLTPLIKLYKNGRVERLMGEEVVPPSFDPTTNVESKDVIISKQHNISARLFIPIITTLTYPQTQKLPLLVYFHGGAFCIGTPFSPTYHNYLNSVTSLANVIGVSVNYRRAPEHPVPIAHEDSWLALKWVASHVGGNGSDEWLNKYADFEKVFLGGDSAGANISHYLGIRVGKEKLDGVKIEGIVYIHPYFWGVDPIGSELDRVEDVESNHNLWRFACPNTSGSDDPLINPAKEPNLGSLGCKRVLVCVAEQDLVKDRGWYYKELLEKNGWGGVVEVFETENENHGFHIFKPTCQNAKPASLTLLYGLCSEICLLTEINVHIFKAKAIRVRFGCQKHQMEMNSEPFVLDSLTHKMLYNWTYTSPVFPMSQENNSQKFKLPQPVLCIGGIMLLELFERDLRQERHNLLVNPVEVVGRKISRAFTVRMLRRGRCSLIYRPRKHKERGCYCWLKRML 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01230 467 Pfam alpha/beta hydrolase fold 83 301 IPR013094 GO:0016787
Trre12g01230 467 Gene3D alpha/beta hydrolase 10 315 IPR029058 -
Trre12g01230 467 SUPERFAMILY alpha/beta-Hydrolases 18 310 IPR029058 -
Trre12g01230 467 PANTHER ARYLACETAMIDE DEACETYLASE 17 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01230 Trre-Chr12 12389209 12399581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01230 8 310 Carbohydrate Esterase AT3G48690 50.161 4.08e-103 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01230 - - cam:101495689 531.946