Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01209 ATGGATAGTGAGAGATCTAAGCTCAAGGTTTTGATTGTTGACCATGATGACGCTTATTTGAATTATCTCTCTAATATACTTATGGAATGGGAATGCATAGGTAAAACTGCTAAAGATGCTCAACAAGCTCTGGTCACTCTTCAAAATGATGGCCTTTATGATCTCATAATTTCAGAGTTCCATCTACTAGGAATGAATGGATTCGATTTTCAAAAGCATATATATATACAACACCAATTCCATATACCTATAATAATGATGTCTAAAGATAGCAGCCAACATTTGATCTCGAAGGCTTTAGAAAATGAAGCTGCACACTTTCTTGTGAAGCCCTTTTGTGCTGAAGATTTCAGAAACCTTTGGAAGTTTGTTACAAAAGCAAAACAACATAAAAAATATTGTTGTAAGAGAAACAATACTGATAAATACCAAGGAGAGGAAGAATATCAAGTTGTGAAGAAACCAAGGATTGTTTGGACAACCTATCTTCACAATTTGTTTCTTCGTGCTATTAAACAAGTTGGATGGGAAAAAGCTAAGCCAAAGAAAATTTTGGAGGTAATGAATATACCAAACTTGACACAGGCAAATGTAGCAAGTCACTTACAGAAGTATCACCGATTTCGACGGGATGTTTCCGGTAAAGGAATGGCTGGGGATATATCCAATAGAGCATTGAAATCAAAATTTGCTTCGGATCTTCCAATGCCAGTGGTAAAAGAATTTAAGGCAATGAGAGCTGCAAAAAAACCTTGTAAGCCAACAAGCGAAAATTCGCAAGCATTGTCATATCAAATGGGACATGATAATCGAGGTTCTACAAGCTATTCTTCTTCTCCAAGTTTCGAGGGTTTGAAATTTGGTAATTACCAAAATCATTGTTCGGTTAGAAGTCATAATGTGAAGAATTTGGACTTGGGAGGCTTTGGTTTCAACAATGTTTCTGATGTTAGGGGCAATAACGCAAGCGAGTTTCAAGCTGCGTCGAATAATGAAGGAAATGCTTATGCGAACATAGAATTTCAACAGCAGAAATTAGATAAAAATGTTATGGAAAATGAGCACAACTATAATGTTGGTACTTCCATCAATGAAGTCAAGTTCAACCAAATGAAATCTAACCTTTCTAATCTTTTGATGGCTGATGACATGAATGAGAAACAGATGAATGCGAACCATGATGCAAGTGAATCTTTGAAATCATACATGTTCAATTTCTTTCAAGATGTGCTACCCCTTGAGCAGTTAAATAAAGGTTGTGAATCTTGTGATGATGCATTTCCTTCGACTGAAATTAATACATGTGTGTGGAATGAGTCACCAAAAAATTCAAGCCAAAACTCTAACCAGTTATATAATGGTGGTAATGATGTCTCTCCTCTAACTGGAATCACATCATGTGTGCTAGAGTCACCAAGTTCAAATCAAATCTCGAAACATTTGCAAGGAAATGAAAGATTTTCAAATGGGGAAGCATCTAATAGGTTCATGGATAGAGGTGGGAATAGGTCAGGCCGGCCTACGAGGCCTTAA 1533 0.3646 MDSERSKLKVLIVDHDDAYLNYLSNILMEWECIGKTAKDAQQALVTLQNDGLYDLIISEFHLLGMNGFDFQKHIYIQHQFHIPIIMMSKDSSQHLISKALENEAAHFLVKPFCAEDFRNLWKFVTKAKQHKKYCCKRNNTDKYQGEEEYQVVKKPRIVWTTYLHNLFLRAIKQVGWEKAKPKKILEVMNIPNLTQANVASHLQKYHRFRRDVSGKGMAGDISNRALKSKFASDLPMPVVKEFKAMRAAKKPCKPTSENSQALSYQMGHDNRGSTSYSSSPSFEGLKFGNYQNHCSVRSHNVKNLDLGGFGFNNVSDVRGNNASEFQAASNNEGNAYANIEFQQQKLDKNVMENEHNYNVGTSINEVKFNQMKSNLSNLLMADDMNEKQMNANHDASESLKSYMFNFFQDVLPLEQLNKGCESCDDAFPSTEINTCVWNESPKNSSQNSNQLYNGGNDVSPLTGITSCVLESPSSNQISKHLQGNERFSNGEASNRFMDRGGNRSGRPTRP 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01209 510 ProSiteProfiles Response regulatory domain profile. 9 125 IPR001789 GO:0000160
Trre12g01209 510 MobiDBLite consensus disorder prediction 475 491 - -
Trre12g01209 510 SUPERFAMILY Homeodomain-like 152 209 IPR009057 -
Trre12g01209 510 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 321 IPR045279 GO:0009736
Trre12g01209 510 NCBIfam myb-like DNA-binding domain, SHAQKYF class 154 206 IPR006447 GO:0003677
Trre12g01209 510 MobiDBLite consensus disorder prediction 249 277 - -
Trre12g01209 510 Gene3D - 7 144 - -
Trre12g01209 510 Gene3D - 151 210 - -
Trre12g01209 510 FunFam Two-component response regulator 150 213 - -
Trre12g01209 510 MobiDBLite consensus disorder prediction 253 277 - -
Trre12g01209 510 MobiDBLite consensus disorder prediction 475 510 - -
Trre12g01209 510 Pfam Response regulator receiver domain 10 118 IPR001789 GO:0000160
Trre12g01209 510 SMART REC_2 8 121 IPR001789 GO:0000160
Trre12g01209 510 SUPERFAMILY CheY-like 6 132 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01209 Trre-Chr12 12081469 12087348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01209 1 214 Response Regulator Gene Family AT2G25180 31.325 2.21e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g01209 Response_reg 1.1e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01209 - - psat:127115658 321.627