Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01207 ATGTTCACTAGTAGTAGTAGTAGCTCTTCTTCCGCTTCACATCCCATTTCATCAGAACCTTCCTCTTCCTCCCAAACAATATCACTGCCGAATTTGGAAATCTCTCGTGGGGTGTCGTTTTCCAACGAGGAGGTGCGGTTAGCTGCGACTACCCCGAAGAAGCGTGCAGGAAGAAAGAAGTTCAAGGAGACTCGCCACGCGGTTTACAGAGGTGTCAGGAGGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCAAACAAGAAGACTAAGATTTGGCTAGGGACTTTTCCAACGGCCGAAATGGCAGCAAGAGCACATGATGTTGCGGCATTGGCATTGAGAGGTCGCGATGCTTGTCTAAACTTTGCAGACTCAGTTACGAGGCTTCCTATTCCTGCAACTACAGAGACAAGAGATATACAAAAGGCGGCTGCAGAAGCAGCTGAGGCTTTTAGACCTGACAAGATTTTAACCCCTAATGACATTGACACGGTAGAAGGTTCCGCCGCCACAGAGGAGCACCTTATGTCTGGTTTGGAAGAGGAAGAAGAGGAAGAGTTGAACATTCCAGAGTCTTTGAGGAATATGGCCCTAATGTCTCCTACACATAGCTTAGAGCATGAGTATGAACATATTAATGAAGATTTTCAAGATGTTGAGGTGTCACTCTGGAGTTTTTCAATTTGA 693 0.4618 MFTSSSSSSSSASHPISSEPSSSSQTISLPNLEISRGVSFSNEEVRLAATTPKKRAGRKKFKETRHAVYRGVRRRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRDACLNFADSVTRLPIPATTETRDIQKAAAEAAEAFRPDKILTPNDIDTVEGSAATEEHLMSGLEEEEEEELNIPESLRNMALMSPTHSLEHEYEHINEDFQDVEVSLWSFSI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01207 230 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Trre12g01207 230 FunFam Ethylene-responsive transcription factor 2 67 126 - -
Trre12g01207 230 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
Trre12g01207 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 228 IPR045277 GO:0003700
Trre12g01207 230 MobiDBLite consensus disorder prediction 1 29 - -
Trre12g01207 230 Pfam AP2 domain 68 117 IPR001471 GO:0003700|GO:0006355
Trre12g01207 230 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Trre12g01207 230 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Trre12g01207 230 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Trre12g01207 230 CDD AP2 69 127 IPR001471 GO:0003700|GO:0006355
Trre12g01207 230 Gene3D AP2/ERF domain 68 126 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01207 Trre-Chr12 12048135 12048827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01207 34 228 AP2-EREBP Transcription Factor Family AT4G25470 51.724 8.11e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre12g01207 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01207 - K09286 psat:127130221 297.36